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  2. TrakEM2 - How to ...

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/howto.html
    18 Sep 2020: A new image will open within ImageJ, which you can save with standard File - Save menu. ... Patch> fixedPatches = new List<Patch>(); Thread task = AlignTask.alignPatchesTask( patches, fixedPatches ); if (null! =
  3. TrakEM2

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/trakem2.html
    16 Oct 2020: TrakEM2 is now feature complete. New contextual menu items "Patch - Open image" and "Patch - Open original image". ... Some speed-ups by using the API better. New filters NormalizeLocalContrast (sort of like CLAHE but accelerated with integral images),
  4. TrakEM2 data sets

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/data.html
    18 Sep 2020: ImageJ plugin for morfological data mining, 3D modeling, and image stitching, registration, editing and annotation.
  5. TrakEM2 snapshots

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/snapshots.html
    18 Sep 2020: A general view, illustrating the creation of new, chained profiles via the "Duplicate, link and send to next/previous layer" method:.
  6. TrakEM2 User Manual

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/trakem2_manual.html
    18 Sep 2020: Select Plugins-> TrakEM2 -> New Project, and then optionally choose a proper template file, either as a. ... In the Layer Tree, right-click a layer and select add new layer set.
  7. TrakEM2 users

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/users.html
    18 Sep 2020: ImageJ plugin for morphological data mining, segmentation, 3D modeling, image stitching, registration, editing and annotation.
  8. TrakEM2 news

    https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/news.html
    18 Sep 2020: New command "Open original image" when an image is selected (same as shiftd). ... TrakEM2 0.8m is part of the new Fiji Madison release of Fiji.

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