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PyTorch — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/pytorch.html24 Jun 2024: download and run an example program:. $ wget https://pytorch.org/tutorials/_downloads/cifar10_tutorial.py $ python cifar10_tutorial.py. -
LAMMPS Molecular Dynamics Simulator — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/lammps.html24 Jun 2024: download LAMMPS git clone --depth=1 https://github.com/lammps/lammps.git cd lammps #load the CSD3 modules for CPU/KNL architectures module purge module load rhel7/default-peta4 #switch to ... download LAMMPS git clone --depth=1 -
Data Transfer Guide — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/transfer.html24 Jun 2024: Do you really need to download those intermediate result or checkpointing files? -
R and Rscript — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/r.html24 Jun 2024: install.packages("cellranger"). which will download and build the package from CRAN. -
Login-Web Interface — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/login-web.html24 Jun 2024: With Login-Web, it is possible to upload and download files, create, edit, submit, run GUI applications, and connect to nodes via SSH, all via a web browser, with no client ... This process is highlighted in the image above. To download files, you must -
Using Python — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-tools/python.html24 Jun 2024: download and install the packages. ] -
Connecting to CSD3 — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/connecting.html24 Jun 2024: Alternatively, download and build OpenSSH yourself, or get PuTTY for Microsoft Windows. -
AlphaFold — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/alphafold.html24 Jun 2024: To install, create a Conda environment using CSD3’s Conda module or download it yourself:. -
CSD3 Host Keys — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/hostkeys.html24 Jun 2024: Host UpdateHostKeys yes. The effect of this will be to download the new host keys (which are already on the nodes) to your local machine in advance of the refresh date,
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