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Running Wales Group software on Windows 7 - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Running_Wales_Group_software_on_Windows_7300px. Select 'Install from Internet' as the download source. The default install location is C:cygwin or C:cygwin64, feel free to leave it at that. ... Later, if you find the download is very slow, try a different mirror. -
Creating mismatched DNA duplex using NAB - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Creating_mismatched_DNA_duplex_using_NABCreating mismatched DNA duplex using NAB. From Docswiki. This can be done using NAB which comes as a part of Ambertools. The strategy would be to create two Watson Crick duplexes such that one of them contains our desired 5'-3' strand and the other -
Preparing input files for a peptide using AMBER - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Preparing_input_files_for_a_peptide_using_AMBERContents. Step 0: Download and install AMBER. Follow the installation steps given in AMBER manual after downloading AMBER 14. -
SVN Page - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/SVN_Page6 Jan 2021: csw34 11:47, 23 September 2008 (BST). Help. svn help <command> is very useful, as is the O'Reilly book, which available free online (and for download) here:12:34, 31 ... A python script and a required xslt stylesheet (download from svnlogfeed.tar ) makes -
Comprehensive Contents Page - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Comprehensive_Contents_PageJenkins CI - explains Jenkins, which we use to download our code and compile each of our targets with each of the compilers every night. - ... These are not linked anywhere on the website and require a username (wales) and password (group) to download:. -
Git Workflow - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Git_WorkflowGit will download the repository. Once it has finished, check that you now have lots of new directories with the contents of the repository. -
Visualising normal modes using VMD and OPTIM - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Visualising_normal_modes_using_VMD_and_OPTIM6 Jan 2021: You require one of these files for each mode, and they are produced for you by a simple Fortran program, visnormodes.f90 that you can download here. -
Generating parameters using RESP charges from GAMESS-US - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Generating_parameters_using_RESP_charges_from_GAMESS-USYou can download a tar file containing all the input and expected output for this tutorial here. -
Visualising normal modes using VMD and OPTIM - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Visualising_normal_modes_using_VMD_and_OPTIMYou require one of these files for each mode, and they are produced for you by a simple Fortran program, visnormodes.f90 that you can download here. -
GMIN - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/GMINThe geometries are saved in XMakemol xyz format. Source code. You can download the latest version of the source code for all our programs under the GPL here.
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