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Genomic scale sub-family assignment ofprotein domainsJulian Gough*…
https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/articles/nar2006-famlevclass.pdf28 Jul 2006: To carry out this test the method requires pairwise scoresfrom HMMs, which usually give a many-against-one (profile)score. ... Figure 1. The E-value calibration curve of the hybrid method using the sigmoidal distribution on the benchmark test. -
gkl910 308..313
https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/articles/nar2007.pdf21 Dec 2006: From a statistical viewpoint, we test the hypo-thesis that assuming a query domain is in superfamily A,the query domain is in family A1. ... To test the hypothesis, we calculate the pairwise scorebetween the query domain and the best profile -
Genomic scale sub-family assignment ofprotein domainsJulian Gough*…
https://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/gough_nar_family_2006.pdf28 Jul 2006: To carry out this test the method requires pairwise scoresfrom HMMs, which usually give a many-against-one (profile)score. ... Figure 1. The E-value calibration curve of the hybrid method using the sigmoidal distribution on the benchmark test. -
gkl910 1..6
https://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/wilson_nar_2007.pdf10 Nov 2006: From a statistical viewpoint, we test the hypo-thesis that assuming a query domain is in superfamily A,. ... To test the hypothesis, we calculate the pairwise scorebetween the query domain and the best profile scoringsequence from family A1. -
plge-02-04-03 529..536
https://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/liu_plos_2006.pdf21 Apr 2006: The dataset(coding plus non-coding) was randomly divided into ten equal-sizedsubsets. During each test, a SVM was trained on nine subsets andtested on the tenth one. ... This procedure was repeated ten times sothat each subset was used as the test set
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