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4 Feb 2011: Recent and Recurrent Selective Sweeps of the Antiviral RNAiGene Argonaute-2 in Three Species of Drosophila. Darren J. Obbard,,1,2 Francis M. Jiggins,3 Nicholas J. Bradshaw,4 and Tom J. Little1,2. 1Institute of Evolutionary Biology, University of

6 Oct 2022: Lewis, SH, Quarles, KA, Yang, Y, Tanguy, M, Frezal, L, Smith, SA, Sharma, SP, Cordaux, R, Gilbert, C, Giraud, I, Collins, DH, Zamore, PD, Miska, EA, Sarkies, P, Jiggins, FM 2017

9 Oct 2007: resulting ina final set of 8375 genes.For pairwise comparisons of the KA/KS ratio between housekeep-. ... Kim for DNA extractions. We thankR. Wilson for permission to present KA/KS estimates derived fromprepublication D.

9 Oct 2007: with genome-wide estimates of Ka/Ks between D. simulans and. D. melanogaster. ... of Ka/Ks for all genes (runmode = –2). Because the Ka/Ks ratio.

18 Feb 2008: adaptively. Although we chose to select genes on the. basis of nonsynonymous divergence (Ka), using the ratio. ... nonsynonymous : synonymous substitutions (Ka/Ks). would have made little difference to the list of genes.

10 Oct 2007: 23–19 ka. From 2.8 Ma African climates varied primarily at a. ... driven by the variation of obliquity (41 ka cycle) and. eccentricity (100 ka cycle).

27 Nov 2008: based measure dN (Yang 1997) and thenucleotide-based measure KA (Comeron 1995); seeBierne & Eyre-Walker (2003) and Haddrill et al. ... see the same relationship here (Spearman’s rank corre-lation, Rs, between EST count and KA, with 95% confi-dence

18 Feb 2008: AA identity. JC† paml‡. KA KS KA S.E. KS SE. ENSANGG0000008286 An. ... Syn Non-Syn. n bp† KA (%) KS (%) KA/KS Fix Poly Fix Poly NI‡ P.

22 Nov 2012: 26. Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA, et al. ... Gene Codes Corporation,. Ann Arbor, MI USA. Available: http://www.genecodes.com.32. Jolley KA, Chan MS, Maiden MCJ (2004) mlstdbNet-Distributed multi-locus.

8 May 2009: KA. /KS. 1.0. 1.5. Review. Evolutionary aspects of RNAi D. J. ... Zuc. KA. /KS. Squ. Hen1. Loqs. VIG. 10. 0.2. 0.4. 0.6.

18 Feb 2008: Intervirology, 7, 346 – 350. Posada D, Crandall KA (2001) Evaluation of methods for detectingrecombination from DNA sequences: computer simulations.Proceedings of the National Academy of Sciences, USA, 98, 13757 –13762.

22 Apr 2021: RESEARCH ARTICLE. Widespread conservation and lineage-specificdiversification of genome-wide DNAmethylation patterns across arthropodsSamuel H. Lewis1,2,3, Laura RossID. 4, Stevie A. BainID4, Eleni PahitaID. 2,3, StephenA. SmithID. 5, Richard

19 Jan 2012: 50. Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA,Choudhury RR, Hayashi C, Maiden MC, Tettelin H, Werren JH: Multilocussequence typing system for the endosymbiont Wolbachia pipientis.

3 Nov 2006: substitution. Bioinformatics 14:817–818. Posada D, Crandall KA (2001) Evaluation of methods for detect-.

30 Apr 2019: For correspondence:. fmj1001@cam.ac.uk (FMJ);. b.longdon2@exeter.ac.uk (BL). †These authors contributed. equally to this work. Competing interests: The. authors declare that no. competing interests exist. Funding: See page 16. Received: 03 March

22 Jul 2016: J Bacteriol. 1998; 180(9):2373–2378. PMID: 9573188. 35. Baldo L, Hotopp JCD, Jolley KA, Bordenstein SR, Biber SA, Choudhury RR, et al.

22 Feb 2010: Embo Journal 1991, 10(11):3523-3532. 4. Lehmann KA, Bass BL: Double-stranded RNA adenosine deam-inases ADAR1 and ADAR2 have overlapping specificities.Biochemistry 2000, 39(42):12875-12884.

2 Jan 2013: Population Genomics of the Wolbachia Endosymbiont inDrosophila melanogasterMark F. Richardson1¤a, Lucy A. Weinert2, John J. Welch3, Raquel S. Linheiro1, Michael M. Magwire3¤b,. Francis M. Jiggins3, Casey M. Bergman1. 1 Faculty of Life Sciences,

6 Nov 2014: Driving Airborne Transmission of A/H5N1 Virus. Cell 157: 329–339. 49. Tsetsarkin KA, Chen RB, Leal G, Forrester N, Higgs S, et al.

3 Nov 2006: Progeny that fail to inherit the bacte-rium from their mother are ZZ and so develop as unin-fected sons; uninfected daughters are not observed (Ka-geyama et al.

12 Apr 2018: RESEARCH ARTICLE. Host shifts result in parallel genetic changes. when viruses evolve in closely related species. Ben Longdon1,2, Jonathan P. Day2, Joel M. Alves2,3, Sophia C. L. Smith2, ThomasM. Houslay1, John E. McGonigle2, Lucia Tagliaferri2,

16 Nov 2017: RESEARCH ARTICLE. Parallel and costly changes to cellular. immunity underlie the evolution of parasitoid. resistance in three Drosophila species. John E. McGonigle, Alexandre B. Leitão, Sarah Ommeslag¤, Sophie Smith, JonathanP. Day, Francis M.

18 Sep 2009: The Transcriptional Response of Drosophilamelanogaster to Infection with the Sigma Virus(Rhabdoviridae)Jennifer Carpenter1., Stephan Hutter2., John F. Baines2, Julia Roller2, Sarah S. Saminadin-Peter2¤a,. John Parsch2, Francis M. Jiggins1¤b. 1

16 Nov 2012: Bishop-Lilly KA, Turell MJ, Willner KM, et al. (2010) Arbovirus. detection in insect vectors by rapid, high-throughput pyrose-.

8 May 2009: between these allelic classesexceeds 40% in some places, and is approximately 20% inthe TED domain, where amino acid divergence (KA).

13 Feb 2015: RESEARCH ARTICLE. The Intracellular Bacterium Wolbachia UsesParasitoid Wasps as Phoretic Vectors forEfficient Horizontal TransmissionMuhammad Z. Ahmed1,2, Shao-Jian Li1, Xia Xue1, Xiang-Jie Yin1, Shun-Xiang Ren1,Francis M. Jiggins3, Jaco M. Greeff2,

3 Mar 2017: Crawford et al. BMC Biology (2017) 15:16 DOI 10.1186/s12915-017-0351-0. RESEARCH ARTICLE Open Access. Population genomics reveals that ananthropophilic population of Aedes aegyptimosquitoes in West Africa recently gaverise to American and Asian

8 May 2009: BioMed CentralBMC Biology. ss. Open AcceResearch articleEvolution and diversity of Rickettsia bacteriaLucy A Weinert1, John H Werren2, Alexandre Aebi3, Graham N Stone1 and Francis M Jiggins1. Address: 1Institute of Evolutionary Biology, University

24 Jan 2016: RESEARCH ARTICLE. A Polymorphism in the Processing BodyComponent Ge-1 Controls Resistance toa Naturally Occurring Rhabdovirus inDrosophilaChuan Cao, Michael M. Magwire¤a, Florian Bayer¤b, Francis M. Jiggins. Department of Genetics, University of

30 Aug 2012: Research. articleEstimating Divergence Dates and Substitution Rates in theDrosophila PhylogenyDarren J. Obbard,,1 John Maclennan,2 Kang-Wook Kim,3 Andrew Rambaut,1 Patrick M. O’Grady,4 andFrancis M. Jiggins5. 1Institute of Evolutionary Biology,

12 Apr 2011: To test this hypothesis,we compared the rate of nonsynonymous substitution (KA)and of synonymous substitution (KS) between NIM 1–4and the remaining independently evolving NIM repeats(NIM 5–11) (supplementary ... We found no evidence for any

25 Nov 2014: The First Myriapod Genome Sequence RevealsConservative Arthropod Gene Content and GenomeOrganisation in the Centipede Strigamia maritimaAriel D. Chipman1", David E. K. Ferrier2", Carlo Brena3, Jiaxin Qu4, Daniel S. T. Hughes5¤a,. Reinhard

16 Jan 2014: Wolbachia Variants Induce Differential Protection toViruses in Drosophila melanogaster: A Phenotypic andPhylogenomic AnalysisEwa Chrostek1, Marta S. P. Marialva1, Sara S. Esteves1, Lucy A. Weinert2, Julien Martinez3,. Francis M. Jiggins3, Luis