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msq280 1043..1056
www.jiggins.gen.cam.ac.uk/pdfs/obbard2010mbe.pdf4 Feb 2011: Recent and Recurrent Selective Sweeps of the Antiviral RNAiGene Argonaute-2 in Three Species of Drosophila. Darren J. Obbard,,1,2 Francis M. Jiggins,3 Nicholas J. Bradshaw,4 and Tom J. Little1,2. 1Institute of Evolutionary Biology, University of -
The Jiggins Lab Webpage
www.jiggins.gen.cam.ac.uk/publications.html6 Oct 2022: Lewis, SH, Quarles, KA, Yang, Y, Tanguy, M, Frezal, L, Smith, SA, Sharma, SP, Cordaux, R, Gilbert, C, Giraud, I, Collins, DH, Zamore, PD, Miska, EA, Sarkies, P, Jiggins, FM 2017 -
doi:10.1016/j.cub.2006.01.065
www.jiggins.gen.cam.ac.uk/pdfs/Obbard_2006.pdf9 Oct 2007: resulting ina final set of 8375 genes.For pairwise comparisons of the KA/KS ratio between housekeep-. ... Kim for DNA extractions. We thankR. Wilson for permission to present KA/KS estimates derived fromprepublication D. -
Contrasting Evolutionary Patterns in Drosophila Immune Receptors…
www.jiggins.gen.cam.ac.uk/pdfs/JigginsKim2006.pdf9 Oct 2007: with genome-wide estimates of Ka/Ks between D. simulans and. D. melanogaster. ... of Ka/Ks for all genes (runmode = –2). Because the Ka/Ks ratio. -
jeb_1305 965..970
www.jiggins.gen.cam.ac.uk/pdfs/jiggins07.pdf18 Feb 2008: adaptively. Although we chose to select genes on the. basis of nonsynonymous divergence (Ka), using the ratio. ... nonsynonymous : synonymous substitutions (Ka/Ks). would have made little difference to the list of genes. -
jbi_1556 1993..2000
www.jiggins.gen.cam.ac.uk/pdfs/wilfert06biogeography.pdf10 Oct 2007: 23–19 ka. From 2.8 Ma African climates varied primarily at a. ... driven by the variation of obliquity (41 ka cycle) and. eccentricity (100 ka cycle). -
doi:10.1098/rsbl.2008.0376
www.jiggins.gen.cam.ac.uk/pdfs/Haddrill%20et%20al.%202008.pdf27 Nov 2008: based measure dN (Yang 1997) and thenucleotide-based measure KA (Comeron 1995); seeBierne & Eyre-Walker (2003) and Haddrill et al. ... see the same relationship here (Spearman’s rank corre-lation, Rs, between EST count and KA, with 95% confi-dence -
Molecular Ecology (2007) 16 , 3497–3510 doi:…
www.jiggins.gen.cam.ac.uk/pdfs/Obbard_2007.pdf18 Feb 2008: AA identity. JC† paml‡. KA KS KA S.E. KS SE. ENSANGG0000008286 An. ... Syn Non-Syn. n bp† KA (%) KS (%) KA/KS Fix Poly Fix Poly NI‡ P. -
deb_pone.0049922 1..7
www.jiggins.gen.cam.ac.uk/pdfs/OseiPoku2012_b.pdf22 Nov 2012: 26. Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA, et al. ... Gene Codes Corporation,. Ann Arbor, MI USA. Available: http://www.genecodes.com.32. Jolley KA, Chan MS, Maiden MCJ (2004) mlstdbNet-Distributed multi-locus. -
doi:10.1098/rstb.2008.0168
www.jiggins.gen.cam.ac.uk/pdfs/obbard2009.pdf8 May 2009: KA. /KS. 1.0. 1.5. Review. Evolutionary aspects of RNAi D. J. ... Zuc. KA. /KS. Squ. Hen1. Loqs. VIG. 10. 0.2. 0.4. 0.6. -
Molecular Ecology (2007) 16 , 3947– 3954 doi:…
www.jiggins.gen.cam.ac.uk/pdfs/carpenter07.pdf18 Feb 2008: Intervirology, 7, 346 – 350. Posada D, Crandall KA (2001) Evaluation of methods for detectingrecombination from DNA sequences: computer simulations.Proceedings of the National Academy of Sciences, USA, 98, 13757 –13762. -
pgen.1008864
www.jiggins.gen.cam.ac.uk/pdfs/lewis2020.pdf22 Apr 2021: RESEARCH ARTICLE. Widespread conservation and lineage-specificdiversification of genome-wide DNAmethylation patterns across arthropodsSamuel H. Lewis1,2,3, Laura RossID. 4, Stevie A. BainID4, Eleni PahitaID. 2,3, StephenA. SmithID. 5, Richard -
Male-killing Wolbachia do not protect Drosophila bifasciata against…
www.jiggins.gen.cam.ac.uk/pdfs/longdon2012.pdf19 Jan 2012: 50. Baldo L, Dunning Hotopp JC, Jolley KA, Bordenstein SR, Biber SA,Choudhury RR, Hayashi C, Maiden MC, Tettelin H, Werren JH: Multilocussequence typing system for the endosymbiont Wolbachia pipientis. -
Adaptive Evolution and Recombination of Rickettsia Antigens Francis…
www.jiggins.gen.cam.ac.uk/pdfs/JME2006.pdf3 Nov 2006: substitution. Bioinformatics 14:817–818. Posada D, Crandall KA (2001) Evaluation of methods for detect-. -
15566153538820 1..21
www.jiggins.gen.cam.ac.uk/pdfs/duxbury2019.pdf30 Apr 2019: For correspondence:. fmj1001@cam.ac.uk (FMJ);. b.longdon2@exeter.ac.uk (BL). †These authors contributed. equally to this work. Competing interests: The. authors declare that no. competing interests exist. Funding: See page 16. Received: 03 March -
Wolbachia in European Populations of the Invasive Pest Drosophila…
www.jiggins.gen.cam.ac.uk/pdfs/cattel2016.pdf22 Jul 2016: J Bacteriol. 1998; 180(9):2373–2378. PMID: 9573188. 35. Baldo L, Hotopp JCD, Jolley KA, Bordenstein SR, Biber SA, Choudhury RR, et al. -
1471-2156-10-75.fm
www.jiggins.gen.cam.ac.uk/pdfs/Carpenter2009b.pdf22 Feb 2010: Embo Journal 1991, 10(11):3523-3532. 4. Lehmann KA, Bass BL: Double-stranded RNA adenosine deam-inases ADAR1 and ADAR2 have overlapping specificities.Biochemistry 2000, 39(42):12875-12884. -
pgen.1003129 1..16
www.jiggins.gen.cam.ac.uk/pdfs/Richardson2012.pdf2 Jan 2013: Population Genomics of the Wolbachia Endosymbiont inDrosophila melanogasterMark F. Richardson1¤a, Lucy A. Weinert2, John J. Welch3, Raquel S. Linheiro1, Michael M. Magwire3¤b,. Francis M. Jiggins3, Casey M. Bergman1. 1 Faculty of Life Sciences, -
ppat.1004395 1..8
www.jiggins.gen.cam.ac.uk/pdfs/longdon2014.pdf6 Nov 2014: Driving Airborne Transmission of A/H5N1 Virus. Cell 157: 329–339. 49. Tsetsarkin KA, Chen RB, Leal G, Forrester N, Higgs S, et al. -
v o l . 1 6 0 , n ...
www.jiggins.gen.cam.ac.uk/pdfs/AmNat-WhichWay.pdf3 Nov 2006: Progeny that fail to inherit the bacte-rium from their mother are ZZ and so develop as unin-fected sons; uninfected daughters are not observed (Ka-geyama et al. -
Host shifts result in parallel genetic changes when viruses evolve in …
www.jiggins.gen.cam.ac.uk/pdfs/longdon2018.pdf12 Apr 2018: RESEARCH ARTICLE. Host shifts result in parallel genetic changes. when viruses evolve in closely related species. Ben Longdon1,2, Jonathan P. Day2, Joel M. Alves2,3, Sophia C. L. Smith2, ThomasM. Houslay1, John E. McGonigle2, Lucia Tagliaferri2, -
Parallel and costly changes to cellular immunity underlie the…
www.jiggins.gen.cam.ac.uk/pdfs/mcgonigle2017.pdf16 Nov 2017: RESEARCH ARTICLE. Parallel and costly changes to cellular. immunity underlie the evolution of parasitoid. resistance in three Drosophila species. John E. McGonigle, Alexandre B. Leitão, Sarah Ommeslag¤, Sophie Smith, JonathanP. Day, Francis M. -
pone.0006838 1..11
www.jiggins.gen.cam.ac.uk/pdfs/Carpenter2009.pdf18 Sep 2009: The Transcriptional Response of Drosophilamelanogaster to Infection with the Sigma Virus(Rhabdoviridae)Jennifer Carpenter1., Stephan Hutter2., John F. Baines2, Julia Roller2, Sarah S. Saminadin-Peter2¤a,. John Parsch2, Francis M. Jiggins1¤b. 1 -
mec_5759 5138..5150
www.jiggins.gen.cam.ac.uk/pdfs/OseiPoku2012.pdf16 Nov 2012: Bishop-Lilly KA, Turell MJ, Willner KM, et al. (2010) Arbovirus. detection in insect vectors by rapid, high-throughput pyrose-. -
1471-2148-8-274.fm
www.jiggins.gen.cam.ac.uk/pdfs/obbard2008.pdf8 May 2009: between these allelic classesexceeds 40% in some places, and is approximately 20% inthe TED domain, where amino acid divergence (KA). -
The Intracellular Bacterium Wolbachia Uses Parasitoid Wasps as…
www.jiggins.gen.cam.ac.uk/pdfs/ahmed2015.pdf13 Feb 2015: RESEARCH ARTICLE. The Intracellular Bacterium Wolbachia UsesParasitoid Wasps as Phoretic Vectors forEfficient Horizontal TransmissionMuhammad Z. Ahmed1,2, Shao-Jian Li1, Xia Xue1, Xiang-Jie Yin1, Shun-Xiang Ren1,Francis M. Jiggins3, Jaco M. Greeff2, -
Population genomics reveals that an anthropophilic population of…
www.jiggins.gen.cam.ac.uk/pdfs/crawford2017.pdf3 Mar 2017: Crawford et al. BMC Biology (2017) 15:16 DOI 10.1186/s12915-017-0351-0. RESEARCH ARTICLE Open Access. Population genomics reveals that ananthropophilic population of Aedes aegyptimosquitoes in West Africa recently gaverise to American and Asian -
1741-7007-7-6.fm
www.jiggins.gen.cam.ac.uk/pdfs/weinert2009.pdf8 May 2009: BioMed CentralBMC Biology. ss. Open AcceResearch articleEvolution and diversity of Rickettsia bacteriaLucy A Weinert1, John H Werren2, Alexandre Aebi3, Graham N Stone1 and Francis M Jiggins1. Address: 1Institute of Evolutionary Biology, University -
A Polymorphism in the Processing Body Component Ge-1 Controls…
www.jiggins.gen.cam.ac.uk/pdfs/cao2015.pdf24 Jan 2016: RESEARCH ARTICLE. A Polymorphism in the Processing BodyComponent Ge-1 Controls Resistance toa Naturally Occurring Rhabdovirus inDrosophilaChuan Cao, Michael M. Magwire¤a, Florian Bayer¤b, Francis M. Jiggins. Department of Genetics, University of -
mss150 1..15
www.jiggins.gen.cam.ac.uk/pdfs/obbard2012.pdf30 Aug 2012: Research. articleEstimating Divergence Dates and Substitution Rates in theDrosophila PhylogenyDarren J. Obbard,,1 John Maclennan,2 Kang-Wook Kim,3 Andrew Rambaut,1 Patrick M. O’Grady,4 andFrancis M. Jiggins5. 1Institute of Evolutionary Biology, -
msq114 2284..2299
www.jiggins.gen.cam.ac.uk/pdfs/Juneja&Lazzaro2010.pdf12 Apr 2011: To test this hypothesis,we compared the rate of nonsynonymous substitution (KA)and of synonymous substitution (KS) between NIM 1–4and the remaining independently evolving NIM repeats(NIM 5–11) (supplementary ... We found no evidence for any -
pbio.1002005 1..24
www.jiggins.gen.cam.ac.uk/pdfs/chipman2014.pdf25 Nov 2014: The First Myriapod Genome Sequence RevealsConservative Arthropod Gene Content and GenomeOrganisation in the Centipede Strigamia maritimaAriel D. Chipman1", David E. K. Ferrier2", Carlo Brena3, Jiaxin Qu4, Daniel S. T. Hughes5¤a,. Reinhard -
pgen.1003896 1..22
www.jiggins.gen.cam.ac.uk/pdfs/Chrostek2013.pdf16 Jan 2014: Wolbachia Variants Induce Differential Protection toViruses in Drosophila melanogaster: A Phenotypic andPhylogenomic AnalysisEwa Chrostek1, Marta S. P. Marialva1, Sara S. Esteves1, Lucy A. Weinert2, Julien Martinez3,. Francis M. Jiggins3, Luis
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