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CamCASP/Programming/7 - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/CamCASP/Programming/76 Jan 2021: Energies in kJ/mol elst ind2C disp2C exch exind2C exdisp2C becke100.out -28.499 -10.832 -9.971 24.756 5.624 1.670 becke10.out -28.499 -10.829 ... 964 24.756 5.622 1.669 becke3.out -28.499 -10.829 -9.962 24.756 5.622 1.668. -
Intel Trace Analyzer and Collector - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Intel_Trace_Analyzer_and_CollectorNavigation. Tools. This page was last edited on 13 May 2019, at 13:24. -
Running a Go model with the AMHGMIN - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Running_a_Go_model_with_the_AMHGMIN6 Jan 2021: 1uama 1uama 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 -
GMIN MOVES module - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/GMIN_MOVES_moduleCsw34 17:24, 14 April 2014 (UTC). Retrieved from "". Navigation menu. -
CamCASP/Notes/3 - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/CamCASP/Notes/36 Jan 2021: Step 0.75 B! Grid exp Colour-map 0 210 0.25 1 6 240 0.75 1 12 300 1.0 0 18 360 0.75 1 24 390 -
https://wikis.ch.cam.ac.uk/ro-walesdocs/images/c/c7/OTV.prepin.txt
https://wikis.ch.cam.ac.uk/ro-walesdocs/images/c/c7/OTV.prepin.txt3 Mar 2016: 1.608 117.636 42.409 -0.13223 23 C1 c B 22 19 14 1.445 121.657 165.337 0.90383 24 O1A o E 23 22 19 -
REMD with AMBER - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/REMD_with_AMBER6 Jan 2021: Navigation. Tools. This page was last edited on 24 October 2008, at 13:48. -
Running a Go model with the AMHGMIN - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Running_a_Go_model_with_the_AMHGMIN1uama 1uama 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 -
CamCASP/Interfaces - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/CamCASP/Interfaces6 Jan 2021: ICUT=24 $END $SYSTEM MEMORY=220000 $END $GUESS GUESS=HCORE $END $DATA Ar in ArHF 86 functions, acpVDZ basis: monomer A, DCBS C1 Ar 18.0 0.0 0.0 -
Using AMBER 14 on the GPU and compute clusters - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Using_AMBER_14_on_the_GPU_and_compute_clustersNavigation. Tools. This page was last edited on 13 May 2019, at 10:24. -
Removing minima and transition states from the database - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Removing_minima_and_transition_states_from_the_database6 Jan 2021: mp466 02:05, 24 October 2008 (BST). Retrieved from "". Navigation menu. -
STARTING INITIAL PATH JOBS WITH PATHSAMPLE - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/STARTING_INITIAL_PATH_JOBS_WITH_PATHSAMPLEpathdata:. GCORES '-c8'. SYSTEM X. EXEC /svn/OPTIM/builds/ifort_64_2019_5_281/OPTIM. NATOMS 24. SEED 1. -
Global optimization of biomolecules using CHARMM - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Global_optimization_of_biomolecules_using_CHARMM0.00000 23 3 GLY H 3.90715 0.75613 0.00000 1 3 0.00000 24 3 GLY CA 3.92458 2.87358 0.00000 1 3 0.00000 25 ... 12 12 13 13 14 17 19 19 20 20 22 20 21 17 18 22 24 24 25 25 27 25 26 22 23 27 29 29 37 37 39 -
Calculating rate constants (GT and fastest path) - CUC3
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Calculating_rate_constants_(GT_and_fastest_path)6 Jan 2021: 2100556 Dijkstra> MFPT for fastest path: A<-B value= 0.7030943368E25 B<-A value= 0.2425804971E-08 Dijkstra> rates without conditional probability: A<-B value= 0.1422284248E-24 B<-A value= ... 412234294.2 Dijkstra> rates with conditional probability: A<-B -
Removing minima and transition states from the database - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Removing_minima_and_transition_states_from_the_databasemp466 02:05, 24 October 2008 (BST). Retrieved from "". Navigation menu. -
Submitting jobs, interactively or to a cluster queue system - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Submitting_jobs,_interactively_or_to_a_cluster_queue_systemthe shortest walltime is 24 hours on Volkhan). The third line tells PBS to execute commands from the current working directory from which you submitted the job. ... SBATCH -n 24 # # then # srun -N1 -n1 /sharedscratch/wales/PATHSAMPLE.pgi/PATHSAMPLE > -
Computing CHARMM FF energy using GMIN, MMTSB and CHARMM - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Computing_CHARMM_FF_energy_using_GMIN,_MMTSB_and_CHARMM0.0000000000 24 2 ALA HB3 4.4074251611 4.5080096993 1.2139617347 DIALA 2 0.0000000000 25 2 ALA C 5.7914561039 2.3986507715 0.0000000000 DIALA 2 0.0000000000 26 ... NGRP NST2 0 1 0 4 1 0 6 1 0 10 1 0 14 1 0 16 1 0 20 1 0 24 1 0 26 1 0 1! -
Notes on MINPERMDIST - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Notes_on_MINPERMDISTNotes on MINPERMDIST. From Docswiki. The subroutine that must not be named. Bringing of headaches. Bane of Friday afternoons. Mother of alignment algorithms. This page aims to collect useful information on how MINPERMDIST works to assist in the -
Connecting Sub-databases - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Connecting_Sub-databases00003_00303 670 811 connectlowest> Distance: 24.67395896. Error creating thumbnail: Unable to save thumbnail to destination. -
Adding partially finished OPTIM stationary points to a PATHSAMPLE…
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Adding_partially_finished_OPTIM_stationary_points_to_a_PATHSAMPLE_databaseNavigation. Tools. This page was last edited on 10 May 2019, at 18:24.
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