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SVUS002-16.tex
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/31_Rane_Chapter_2005.pdf21 Sep 2006: The second less obvious,but equally plausible possibility (model B) is that neuronal damage re-sults from a derangement in some aspect of normal PrPC metabolism.In this view such altered ... It was therefore logical and simplerto propose that PrPSc -
Supplement_Final
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/81_Shao_S_Mol_Cell_2013.pdf16 May 2013: poly(A) tail (Figure 2A).Translation of b-VHP-pA produced a heterogeneous set of prod-ucts, some of which contained a tethered tRNA, as evidenced bytheir sensitivity to RNase digestion ... internal polylysine domain (b-VHP-K12) (Figure 2A). As -
Protein-driven membrane stresses in fusion and fission
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Papers/Kozlov%20Trends%20Biochem%20Sci%202010.pdf20 Nov 2010: However, the fusion peptideis clearly more than just a hold on a target membrane,because some amino acid substitutions within the fusionpeptide inhibit fusion without lowering peptide–mem-brane binding. ... 704. membrane stresses, has been confirmed in -
01Eichler(Hedge)
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/33_Hegde_RS_Chapter_2005.pdf31 Oct 2005: Indeed, several abundant membrane components havebeen identified associated with the translocon (some with large cytosolic domains such as p180)84. ... 1) provides several. advantages to the cell, some of which are more obvious than others. -
Protection from cytosolic prion protein toxicityby modulation of…
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/30_Rane_N_EMBO_2004.pdf8 Nov 2004: inefficiency in the activity of some signals, we turned our. attention to native PrP. ... some activity. Remarkably, as assessed by either Annexin V. exposure on the extracellular surface (Figure 8A and B) or. -
Protein targeting and degradation are coupled for elimination of…
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/73_Hessa_T_Nature_2011.pdf14 Jul 2011: 3b, c). Thus, the Bag6 complex captures substratesconcomitant with or after the release of nascent chains from the ribo-some; these same hydrophobic domains are bound by the SRP as longas ... After ubiquitination,BAG6 might chaperone its -
The Rockefeller University Press, 0021-9525/97/02/567/15 $2.00The…
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/8_Lingappa_JE_JCB_1997.pdf3 Feb 1997: SDS-PAGE was per-formed using 15% gels, and some gels were fluorographed using Enhance(Dupont Co., Willmington, DE). ... some of the ma-terial in complexes A, B, and C constitutes intermediatesin the biogenesis of completed 750-S capsids. -
doi:10.1016/j.cell.2006.10.032
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/43_Kang_SW_Cell_2006.pdf30 Nov 2006: synthesis to degradation) is regulated for at least some. substrates at one time or another. ... observed in some lanes. (B) Analysis of overloaded samples prepared as in (A) reveals increased amounts of BiP in both high-molecular-weight fractions (HMW) -
Slide 1
https://www2.mrc-lmb.cam.ac.uk/download/integration-and-scaling-harry-powell-mrc-lmb-crystallography-course-10th-may-2013/?wpdmdl=18796&refresh=6686ae729870a172010251413 May 2013: the spot intensity.In practice, however, there is always some background, so this needs to be taken into account. ... that spots close to each other on the detector (even on different images) have similar profiles has some validity. -
JCB: Article The Rockefeller University Press $30.00J. Cell Biol. ...
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Papers/J%20Cell%20Biol%202010%20Howes.pdf24 Aug 2011: We next sought to verify some key targets as novel cargo for the CLIC pathway. ... In some instances, intriguing tubular networks were seen with labeling for anti–CD44-HRP after 40 min of internal-ization (Fig. -
https://www2.mrc-lmb.cam.ac.uk/wp-json/wp/v2/pages/1949
https://www2.mrc-lmb.cam.ac.uk/wp-json/wp/v2/pages/1949Arndt, U.W. (1953) X-ray Scattering by Some Native and Denatured Proteins in the solid state. ... 1954) Some X-ray Scattering Results on Nucleoproteins and their Components Trans Faraday Soc. -
Membrane Protein Insertion at the Endoplasmic Reticulum
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/75_Shao_S_Ann_Rev_2011.pdf9 Nov 2011: Most types of membrane proteins are inserted by a cotranslational pathway, although some use a posttranslational pathway.ER, endoplasmic reticulum. ... c) Three-dimensional structure of bovine rhodopsin showing that TMDs arehighly variable in structure; -
BAR Domains as Sensors ofMembrane Curvature: TheAmphiphysin BAR…
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/PeterBARdomains.pdf?ijkey=TikQO8xVkpUak&keytype=ref&siteid=sci30 Jan 2004: S3A). Some of these tubulesemanated from the plasma membrane andwere accessible to the membrane fluorescentdye FM2-10. ... 4), and discovered BARs inmany different contexts. Some BAR proteinshave additional lipid interactions through adjacentpleckstrin -
Science Journals — AAAS
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/wp-content/uploads/sites/8/2023/08/Science_2021.pdf26 Aug 2021: 1E). The mRNAs for de-graded subunits of the proteasome and ribo-some were overrepresented by around 1.5- to2-fold in MCF7 cells, but not other breast can-cer cell ... A. B. 0.8% input 100%33%. PAAF1. PSMC5. 460. 55. 41. 5543. -
Slide 1
https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/courses/lmb_crystallography_course_2013/lectures/processing.pdf13 May 2013: the spot intensity.In practice, however, there is always some background, so this needs to be taken into account. ... that spots close to each other on the detector (even on different images) have similar profiles has some validity. -
Twinning and other pathologies Andrey Lebedev CCP4 OD-‐structures…
https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/courses/lmb_crystallography_course_2013/lectures/pathologies_and_twinning.pdf11 Jun 2013: Twins by reAcular merohedry (inc some OD-‐twins), allotwins, disordered structures -‐ Can be readily seen in diffracAon images (with spot predicAons shown). ... Molecular Replacement: –Two structures are globally very similar (e.g. rmsd = 0.5A) -
PII: 0304-3991(84)90197-9
https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/ultram84.pdf26 Oct 2008: 1. Introduction. The native structure of biological specimens can be investigated with the electron microscope at high resolution if some means is provided for retaining their hydration in the surrounding high ... This stage has features which over- come -
Acetylation of MEK2 and I{kappa}B kinase (IKK) activation loop…
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/YopJ.pdf28 Nov 2006: TNF-treatment induces a rapid activation of IKK which in turnphosphorylates IB leading to the ubiquitination and protea-some-mediated degradation of IB. ... In the light of our results,we speculate that some of these effects might be due to thetransfer -
molcel2806mmc1
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/FtsK%20MolCell%202008%20Lowe%20Supp%20data.pdf16 Jul 2008: The very common fold consists of three helices (H1-H3) and a wing with some. ... A is in red, B is in yellow. and C is in blue. -
https://www2.mrc-lmb.cam.ac.uk/groups/ribo/wp-json/wp/v2/pages/9
https://www2.mrc-lmb.cam.ac.uk/groups/ribo/wp-json/wp/v2/pages/9Rev Mol Cell Biol/span span class="pubJournalRef"strong25/strong(3): 168-186/span/li/ulh3 id="pub2023"2023/h3ul class="lmbpubmedpapers"lispan class="pubAuthors"Querido, J.B., et al./span ... a href="http://www.ncbi.nlm.nih.gov/pubmed/19955257" -
doi:10.1016/j.jbbm.2005.12.008
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/rfcloning2006%20published.pdf19 Apr 2006: 2). Occasional mistakes in the primers do occurand in some rare cases strand displacement activity of PfuTurbok has introduced unwantedinsertions (data not shown). ... Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of -
mbar-v2
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/presentations/mbar-v2.pdf31 Aug 2018: 1.2.4.4.The model now looks like it fits the map a great deal better, but there is still some room for improvement so we will carry interactively refine ... In some cases this can be very helpful. 1.2.7.6.His 17 has been built without a side chain, but -
doi:10.1016/j.cub.2004.02.060
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Zimmerberg_McLaughlin2004.pdf17 Mar 2004: The newly recognized BAR(Bin/Amphiphysin/Rvs) domain is present in a numberof proteins — amphiphysins, endophilin, arfaptins,nadrins, beta-centaurins and oligophrenins — some ofwhich are critical for the recycling of synaptic ... Theends and concave -
MeganPalm
https://www2.mrc-lmb.cam.ac.uk/groups/wschafer/MeganPalm.pdf3 Dec 2005: 35. A B. C D. E F. Fig. 7. Some best-fit results of deformable template matching. ... Some figures arerotated for plotting. (A) A fully laid egg in perfect condition. -
M410_8e 231..235
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Dynamin.pdf6 Mar 2001: Some studies have also reported ssion of lipidtubules by dynamin (possibly involving a pinching/constrictionaction)13,16. ... dynamin transfections. This mutant also shows some uptake of transferrin at a perinuclear. -
Phil. Trans. Roy. Soc. Lond. B. 261, 95-104 (1971) ...
https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/ptrs71.pdf26 Nov 2012: To complete the investigation, some biological specimens are also examined with the phase plate in position, and a comparison is. ... a). (b). 1 1. FIGURE 9. Densitometer traces of some features shown in figures 8(a) and (b) illustrating improvements in -
Proteins containing photosynthetic reaction centre domains modulate…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Nussbaum_Nat_micro_2024.pdf1 Mar 2024: Fig. 3a,b). As SepF depletion progressed, cells became filamentous and, after 6 h, CdpB1’s ring-like structures began to fade whereas CdpB2 maintained some localization at division sites. ... Demographic analysis shows that the highest signal intensity -
1202.tif
https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/jcb84.pdf16 Jun 2006: b a t i o n for 4 - 5 w k at 17C. ... Some lines of the surface lattice and the choice of unit cell used are indicated in B. -
doi:10.1016/j.ceb.2003.11.005
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/cocb%202003.pdf27 Nov 2003: Equivalent proteinsare found in most other non-spherical bacteria. Mutantslacking MreB are round instead of rod-shaped; however,some non-spherical bacteria that naturally lack actin-likeproteins control their shape by ... Some of the cytoskeleton -
BAR Domains as Sensors ofMembrane Curvature: TheAmphiphysin BAR…
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/PeterBARdomains.pdf30 Jan 2004: S3A). Some of these tubulesemanated from the plasma membrane andwere accessible to the membrane fluorescentdye FM2-10. ... 4), and discovered BARs inmany different contexts. Some BAR proteinshave additional lipid interactions through adjacentpleckstrin -
Model Building and Refinement Practical Introduction In this…
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/presentations/mbar.docx27 Apr 2016: 2.2.4.4. The model now looks like it fits the map a great deal better, but there is still some room for improvement so we will carry interactively refine ... 3.1.4. Leave fields “Phases”, TLS coefficients” and “Reference model” may be left as -
Calcium-mediated Evidence from the Changes in Gap Junction Low ...
https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/jcb83.pdf1 Nov 2012: 1 B. The shoulder associated with some of the (1,0) peaks is due to contamination from the meridian. ... may exert constraints on changes, possibly leading to some distortion o f the structure. -
st7a11.qxd
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/MukB%20Structure%201999.pdf10 Sep 1999: In contrast, no nucleotidebinding was found for the N-terminal 342 residues ofMukB (unpublished observations), but some hydrolysisof ATP and GTP has been reported [15]. ... 17. Miroux, B. & Walker, J.E. (1996). Overproduction of proteins inEscherichia -
plbi-04-09-03 1532..1548
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/SchmidBetaPaper/BetaHub.pdf31 Aug 2006: Dab2/Disabled2 (a cargo adaptor for proteins like megalin)binds to both a and b appendages, and it is likely that some ofthe other accessory proteins that bind to both a ... Nevertheless some acces-sory adaptors like b-arrestin (for internalisation of -
The Jour nal o f Cel l Bio logy ...
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/epsinR.pdf9 Jan 2003: Some of the key residues in the human epsinR sequence referred to in the paper are numbered. ... 4 B; see Fig. 1 D for con-structs used), to the N3 construct of epsinR, with some fur-ther clathrin binding found in the N2 construct (Fig. -
The Coot User Manual
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html1 Mar 2021: The Coot User Manual -
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/config.log
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/config.log10 Dec 2014: set-variable -Wno-unused-result -O -P conftest.c &5 configure:5925: /usr/bin/nm -B "conftest.o" configure:5928: output 0000000000000000 B some_variable configure:5935: result: BSD nm ... Some functions are actually named | something starting with __ and -
No Job Name
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/MreC%20MM%202006.pdf7 Dec 2006: held together via hydrophobic interactions betweenleucine residues, some of them participating in a heptarepeat typical of leucine zippers (Figs 1B and 3). ... The sequence of the cytoplasmic tail of MreC isquite variable and is very short in some -
Twinning and other pathologies Andrey Lebedev CCP4 OD-‐structures…
https://www2.mrc-lmb.cam.ac.uk/wp-json/wp/v2/pages/%22https:/www2.mrc-lmb.cam.ac.uk/download/twinningaandaotherapathologiesa-andreyalebedeva-a/?wpdmdl=18788&11 Jun 2013: Twins by reAcular merohedry (inc some OD-‐twins), allotwins, disordered structures -‐ Can be readily seen in diffracAon images (with spot predicAons shown). ... Molecular Replacement: –Two structures are globally very similar (e.g. rmsd = 0.5A) -
Slide 1
https://www2.mrc-lmb.cam.ac.uk/wp-json/wp/v2/pages/%22https:/www2.mrc-lmb.cam.ac.uk/download/integration-and-scaling-harry-powell-mrc-lmb-crystallography-course-10th-may-2013/?wpdmdl=18796&13 May 2013: the spot intensity.In practice, however, there is always some background, so this needs to be taken into account. ... that spots close to each other on the detector (even on different images) have similar profiles has some validity.
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