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  2. SVN setup - CUC3

    https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/SVN_setup
    6 Jan 2021: You should see a list of the directories in the repository, something like this:. ... This also prevents you from having to edit Makefiles more than is absolutely necessary.
  3. Setting up (CHARMM) - Docswiki

    https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Setting_up_(CHARMM)
    You can download the PDB we're using as the starting point for this tutorial here. ... Navigation. Tools. This page was last edited on 8 February 2012, at 15:52.
  4. Wales Group - Docswiki

    https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Wales_Group
    It is highly recommended that you read this once you have set up your details. ... Navigation. Tools. This page was last edited on 3 June 2019, at 10:26.
  5. CamCASP/Compilation - CUC3

    https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/CamCASP/Compilation
    6 Jan 2021: Libraries that Seem OK. ATLAS : yet to find a flaw in this library. ... It may be possible to get around this, but for now, I've found it easier to download my own copy of GCC 4.4.
  6. SVN setup - Docswiki

    https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/SVN_setup
    You're now good to download the group code :). 'Checking out' the code. ... This version of the code is what we are all working on together.
  7. Useful Makefiles - CUC3

    https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Useful_Makefiles
    6 Jan 2021: NAMD2 with Intel compilers. This one requires the openmpi/intel64 module. Step 1: charm++. ... Navigation. Tools. This page was last edited on 9 July 2010, at 10:53.
  8. Generating parameters using RESP charges from GAMESS-US - Docswiki

    https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Generating_parameters_using_RESP_charges_from_GAMESS-US
    You can download a tar file containing all the input and expected output for this tutorial here. ... 1. make build_structure directory:. mkdir build_structure. This directory should contain your.
  9. Preparing an AMBER topology file for a protein plus ligand system -…

    https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Preparing_an_AMBER_topology_file_for_a_protein_plus_ligand_system
    6 Jan 2021: This is best done using a script or a series of piped commands. ... Molfacture, a tool in VMD. You will need the latest version of VMD to do this so either download and compile it yourself (which is pretty easy - honest!), or use my
  10. Preparing an AMBER topology file for a protein plus ligand system -…

    https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Preparing_an_AMBER_topology_file_for_a_protein_plus_ligand_system
    This is best done using a script or a series of piped commands. ... Molfacture, a tool in VMD. You will need the latest version of VMD to do this so either download and compile it yourself (which is pretty easy - honest!), or use my

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