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https://blogs.ch.cam.ac.uk/pmr/2007/10/13/frog-not-just-free-but-open-…
https://blogs.ch.cam.ac.uk/pmr/2007/10/13/frog-not-just-free-but-open-prodrg-take-note/feed/index.xml17 Jan 2022: Please clean this statement up in your multiple posts. The FAQ page at http://www.chemspider.com/FAQ.aspx declares "May I download the data and use it in my own ... declaresbr / “May I download the data and use it in my own database(s)?br / You have -
https://blogs.ch.cam.ac.uk/pmr/2007/11/02/derivative-use-of-open-acces…
https://blogs.ch.cam.ac.uk/pmr/2007/11/02/derivative-use-of-open-access-works/feed/index.xml17 Jan 2022: hold in an SDFile as far as I know without corrupting the data.</i> "Corruption" is a strong word. ... The data distribution site does not need to be on the same machine as your service. -
Chemspider and Pubchem – open data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-data/17 Jan 2022: If Chemspider allows the direct download and re-use of their data from their site then I also congratulate them. ... As far as re-use, you can find this where you can download the data (including assay data) in bulk. -
FAQ How do I get in touch Contact Maike ...
https://www.stemcells.cam.ac.uk/files/genomics_-_faq_2021.pdf18 Feb 2022: How will I receive the sequencing data. Once your sequencing run has finished, we will send you information on how to download the data over FTP. ... To avoid incorporating noisy data from dead cells in your experiment, 10X Genomics provides a -
https://blogs.ch.cam.ac.uk/pmr/2007/10/24/open-notebook-nmr-motivation…
https://blogs.ch.cam.ac.uk/pmr/2007/10/24/open-notebook-nmr-motivations-and-confusions/feed/index.xml17 Jan 2022: If you cannot download the data and remove bad data points etc and return the data to Christoph/NMRShiftDB with commentary then I remain confused about the rights around Open Data.] ... I thought it was.br / [If you cannot download the data and remove -
petermr's blog | A Scientist and the Web | Page 80
https://blogs.ch.cam.ac.uk/pmr/page/80/17 Jan 2022: There is no algorithm to expose the whole data. By contrast you can, in principle, download the whole of an Open system. ... We must know that – in principle – we have the absolute right to download and re-purpose the data. -
https://blogs.ch.cam.ac.uk/pmr/2009/03/10/approaches-to-compound-docum…
https://blogs.ch.cam.ac.uk/pmr/2009/03/10/approaches-to-compound-documents-ore-pdf-docx/feed/index.xml17 Jan 2022: edu:8080/m1/ For those public studies people can download all the raw data and all the annotated and result data and even the underlying software. ... our experiments and download RAW and processed data and all needed software and that can only be topped -
https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-…
https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/feed/index.xml17 Jan 2022: However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is useful. ... and other bioinformatics data sets, as well as PubChem, has been that some sort of -
https://blogs.ch.cam.ac.uk/pmr/2007/04/24/world-wide-molecular-matrix-…
https://blogs.ch.cam.ac.uk/pmr/2007/04/24/world-wide-molecular-matrix-pubchem-quality-metrics-etc/feed/index.xml17 Jan 2022: denominator.” After analyzing the data, over 200,000 individual chemical shifts I can say DON’T judge by the lowest common denominator. ... These are truly excellent statistics if you consider that this is an open access system where people are -
https://blogs.ch.cam.ac.uk/pmr/2007/10/14/open-data-driven-science-and…
https://blogs.ch.cam.ac.uk/pmr/2007/10/14/open-data-driven-science-and-a-brokering-system-for-ons/feed/index.xml17 Jan 2022: the link is here: http://www.chemspider.com/blog/?p=191 Two people have commented so tonight I looked for the CrystalEye data to download but cannot find the download site. ... looked for the CrystalEye data to download but cannot find the download site. -
petermr's blog | A Scientist and the Web | Page 146
https://blogs.ch.cam.ac.uk/pmr/page/146/17 Jan 2022: In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML file. ... This is the approach we have adopted (Jim Downing wrote it specifically to help the -
petermr's blog | A Scientist and the Web | Page 189
https://blogs.ch.cam.ac.uk/pmr/page/189/17 Jan 2022: Now ChemZoo is a commercial company, the data are not open (at least not explicitly – can anyone download the whole data base and if so what license covers it) and the ... In contrast Pubchem is open – anyone – like us can download the whole data. -
https://blogs.ch.cam.ac.uk/pmr/tag/open-data/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/open-data/feed/index.xml17 Jan 2022: There is no explicit mention of the right to download material for data-mining and a lot of verbiage about “consistency with publishers’s policies” which is no help to scientists ... and want to read the file, download the zip file, unzip it, point -
Open metabolomics data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2008/05/04/open-metabolomics-data/17 Jan 2022: granted permission to publish the data (and metadata). If interested, please find below a link to our public studies that are composed of experimental design metadata as well as processed metabolite ... So, in principle, anyone could download our -
https://blogs.ch.cam.ac.uk/pmr/tag/data-curation-hamburger/feed/index.…
https://blogs.ch.cam.ac.uk/pmr/tag/data-curation-hamburger/feed/index.xml17 Jan 2022: What I would really need is the digital raw data…preferably in some open format, which I can download, look at and work on. ... to realise that the data they produce has value beyond the immediate research project for which it was produced. -
CrystalEye and repositories: distribution and integrity |…
https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/17 Jan 2022: Now imagine that a spider starts to download the entries and “finishes” a month later. ... However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is -
Open Data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/17/open-data/17 Jan 2022: This is the approach we have adopted (Jim Downing wrote it specifically to help the community download the data and has made it available under Open Source). ... Repositories in general do not archive data. The work can be re-used. -
https://blogs.ch.cam.ac.uk/pmr/2011/11/25/the-scandal-of-publisher-for…
https://blogs.ch.cam.ac.uk/pmr/2011/11/25/the-scandal-of-publisher-forbidden-textmining-the-vision-denied/feed/index.xml17 Jan 2022: As I did my PhD in Denmark (DTU), I naively wrote a robot to download the issues of a well known chemical data journal. ... 0000 /pmr/2011/11/25/the-scandal-of-publisher-forbidden-textmining-the-vision-denied/#comment-3266 Saying the data is in the -
https://blogs.ch.cam.ac.uk/pmr/2011/11/15/semantic-molecular-future-ar…
https://blogs.ch.cam.ac.uk/pmr/2011/11/15/semantic-molecular-future-article-accesses-during-first-30-days/feed/index.xml17 Jan 2022: Yes, its a shame that BMC don't make the download data public. ... Yes, its a shame that BMC don’t make the download data public. -
Open Data – 2 | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/19/open-data-2/17 Jan 2022: But the data world needs a generic term for the same reason that the publication world does. ... In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML
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