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petermr's blog | A Scientist and the Web | Page 146
https://blogs.ch.cam.ac.uk/pmr/page/146/17 Jan 2022: In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML file. ... This is the approach we have adopted (Jim Downing wrote it specifically to help the -
petermr's blog | A Scientist and the Web | Page 189
https://blogs.ch.cam.ac.uk/pmr/page/189/17 Jan 2022: Now ChemZoo is a commercial company, the data are not open (at least not explicitly – can anyone download the whole data base and if so what license covers it) and the ... In contrast Pubchem is open – anyone – like us can download the whole data. -
https://blogs.ch.cam.ac.uk/pmr/tag/open-data/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/open-data/feed/index.xml17 Jan 2022: There is no explicit mention of the right to download material for data-mining and a lot of verbiage about “consistency with publishers’s policies” which is no help to scientists ... and want to read the file, download the zip file, unzip it, point -
Open metabolomics data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2008/05/04/open-metabolomics-data/17 Jan 2022: granted permission to publish the data (and metadata). If interested, please find below a link to our public studies that are composed of experimental design metadata as well as processed metabolite ... So, in principle, anyone could download our -
https://blogs.ch.cam.ac.uk/pmr/tag/data-curation-hamburger/feed/index.…
https://blogs.ch.cam.ac.uk/pmr/tag/data-curation-hamburger/feed/index.xml17 Jan 2022: What I would really need is the digital raw data…preferably in some open format, which I can download, look at and work on. ... to realise that the data they produce has value beyond the immediate research project for which it was produced. -
CrystalEye and repositories: distribution and integrity |…
https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/17 Jan 2022: Now imagine that a spider starts to download the entries and “finishes” a month later. ... However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is -
Open Data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/17/open-data/17 Jan 2022: This is the approach we have adopted (Jim Downing wrote it specifically to help the community download the data and has made it available under Open Source). ... Repositories in general do not archive data. The work can be re-used. -
https://blogs.ch.cam.ac.uk/pmr/2011/11/25/the-scandal-of-publisher-for…
https://blogs.ch.cam.ac.uk/pmr/2011/11/25/the-scandal-of-publisher-forbidden-textmining-the-vision-denied/feed/index.xml17 Jan 2022: As I did my PhD in Denmark (DTU), I naively wrote a robot to download the issues of a well known chemical data journal. ... 0000 /pmr/2011/11/25/the-scandal-of-publisher-forbidden-textmining-the-vision-denied/#comment-3266 Saying the data is in the -
https://blogs.ch.cam.ac.uk/pmr/2011/11/15/semantic-molecular-future-ar…
https://blogs.ch.cam.ac.uk/pmr/2011/11/15/semantic-molecular-future-article-accesses-during-first-30-days/feed/index.xml17 Jan 2022: Yes, its a shame that BMC don't make the download data public. ... Yes, its a shame that BMC don’t make the download data public. -
Open Data – 2 | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/19/open-data-2/17 Jan 2022: But the data world needs a generic term for the same reason that the publication world does. ... In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML
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