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Latex2html - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Latex2htmlThe script itself is available for download here. ... Here are the before and after lines:. Before:. $trans_color = $TRANSPARENT_COLOR||'gray85';. -
SVN setup - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/SVN_setupYou're now good to download the group codeĀ :). 'Checking out' the code. ... See here for more info on the svn commands for branching and merging. -
Visualising normal modes using VMD and OPTIM - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Visualising_normal_modes_using_VMD_and_OPTIMYou require one of these files for each mode, and they are produced for you by a simple Fortran program, visnormodes.f90 that you can download here. ... source draw_vector.tcl. load the nmode.P.xyz files. You have a choice here. -
Calculating binding free energy using the FSA method - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Calculating_binding_free_energy_using_the_FSA_methodYou can find the files used in this tutorial in the tarballs here:. ... For NADP+, we use slightly modified parameters from the AMBER Parameter Database that you can download here and here.
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