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  2. https://blogs.ch.cam.ac.uk/pmr/2012/08/07/is-this-paper-open-access/fe…

    https://blogs.ch.cam.ac.uk/pmr/2012/08/07/is-this-paper-open-access/feed/index.xml
    17 Jan 2022: It is gratis as I and anyone can download it for free, but not libre as I cannot use it for all lawful purposes due to non-commercial clauses. ... Not only do they forbid bulk download of the vast majority of the content.
  3. https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-data/feed/index.xml
    17 Jan 2022: Not sure, but the FTP download does not contain links to other databases though. ... As far as re-use, you can find this where you can download the data (including assay data) in bulk <blockquote> Databases of molecular data on the NCBI FTP site include
  4. https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/feed/index.xml
    17 Jan 2022: However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is useful. ... and other bioinformatics data sets, as well as PubChem, has been that some sort of
  5. https://blogs.ch.cam.ac.uk/pmr/2015/04/23/is-figshare-open-it-is-not-j…

    https://blogs.ch.cam.ac.uk/pmr/2015/04/23/is-figshare-open-it-is-not-just-about-open-or-closed-it-is-about-control/feed/index.xml
    17 Jan 2022: For myself, I agree that APIs are indeed valuable and important; but for maximum transparency, replicability and disaster-proofness, it's important to offer bulk download as well. ... For myself, I agree that APIs are indeed valuable and important; but
  6. Mendeley Data IS OPEN! | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/03/10/mendeley-data-is-open/
    17 Jan 2022: That said, currently there is no bulk data dump option available to all. ... I’m assuming that the bulk download for “academic researchers who want to work closely with us.” will carry restrictions.
  7. More on Open Data for molecules | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/04/27/1050/
    17 Jan 2022: I have also been careful on occasion not to take Open material and carry out bulk download and transformation without alerting the owner (and there normally is an owner or a ... We also mount data under various data and code licences. Anyone can download
  8. Is this paper Open Access? | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2012/08/07/is-this-paper-open-access/
    17 Jan 2022: It is gratis as I and anyone can download it for free, but not libre as I cannot use it for all lawful purposes due to non-commercial clauses. ... Not only do they forbid bulk download of the vast majority of the content.
  9. petermr's blog | A Scientist and the Web | Page 149

    https://blogs.ch.cam.ac.uk/pmr/page/149/
    17 Jan 2022: have time right now): –. AD: However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download ... PMR: see intro] […]. However, I would suggest that the
  10. https://blogs.ch.cam.ac.uk/pmr/category/crystaleye/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/crystaleye/feed/index.xml
    17 Jan 2022: of bulk download is useful. ... the data, and cost about US $20 for the bandwidth costs of a 100GB download.
  11. Update on text-mining NIH | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/04/07/update-on-text-mining-nih/
    17 Jan 2022: You  may not bulk download these, either through robots or OAI-PMH.
  12. Chemspider and Pubchem – open data | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-data/
    17 Jan 2022: As far as re-use, you can find this where you can download the data (including assay data) in bulk. ... Not sure, but the FTP download does not contain links to other databases though.
  13. #scholrev: Strategy and decentralisation | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2013/03/24/scholrev-strategy-and-decentralisation/
    17 Jan 2022: The database would be available for bulk download and data mining.
  14. Open API (or glorious API?) | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/09/15/open-api-or-glorious-api/
    17 Jan 2022: By “open access” to this literature, we mean its free availability on the public internet, permitting any users to read, download, copy, distribute, print, search, or link to the full texts ... data available for bulk download. That is a limitation
  15. petermr's blog | A Scientist and the Web | Page 131

    https://blogs.ch.cam.ac.uk/pmr/page/131/
    17 Jan 2022: You  may not bulk download these, either through robots or OAI-PMH. ... You may not download material from it (except to expose it to your own eyeballs), and certainly not redistribute it.
  16. https://blogs.ch.cam.ac.uk/pmr/2012/07/27/i-ask-elsevier-for-their-lis…

    https://blogs.ch.cam.ac.uk/pmr/2012/07/27/i-ask-elsevier-for-their-list-of-articles-published-as-hybrid-open-access/feed/index.xml
    17 Jan 2022: If you would like to conclude our earlier discussion about a bulk data download to facilitate your text mining, please do let me know. ... If you would like to conclude our earlier discussion about a bulk data download to facilitate your text mining,
  17. petermr's blog | A Scientist and the Web | Page 129

    https://blogs.ch.cam.ac.uk/pmr/page/129/
    17 Jan 2022: I have also been careful on occasion not to take Open material and carry out bulk download and transformation without alerting the owner (and there normally is an owner or a ... We also mount data under various data and code licences. Anyone can download
  18. petermr's blog | A Scientist and the Web | Page 41

    https://blogs.ch.cam.ac.uk/pmr/page/41/
    17 Jan 2022: Please try not to download movies during my presentation. More later I hope. ... If you would like to conclude our earlier discussion about a bulk data download to facilitate your text mining, please do let me know.
  19. CrystalEye and repositories: distribution and integrity |…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/
    17 Jan 2022: Now imagine that a spider starts to download the entries and “finishes” a month later. ... However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is
  20. petermr's blog | A Scientist and the Web | Page 69

    https://blogs.ch.cam.ac.uk/pmr/page/69/
    17 Jan 2022: That said, currently there is no bulk data dump option available to all. ... I’m assuming that the bulk download for “academic researchers who want to work closely with us.” will carry restrictions.
  21. Is Figshare Open? "it is not just about open or closed, it is…

    https://blogs.ch.cam.ac.uk/pmr/2015/04/23/is-figshare-open-it-is-not-just-about-open-or-closed-it-is-about-control/
    17 Jan 2022: For myself, I agree that APIs are indeed valuable and important; but for maximum transparency, replicability and disaster-proofness, it’s important to offer bulk download as well.

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