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Preparing input files for a peptide using AMBER - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Preparing_input_files_for_a_peptide_using_AMBERcoords.prmtop) and coordinates file (coords.inpcrd) for use with GMIN, OPTIM and PATHSAMPLE. ... Contents. Step 0: Download and install AMBER. Follow the installation steps given in AMBER manual after downloading AMBER 14. -
Preparing an AMBER topology file for a protein plus ligand system -…
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Preparing_an_AMBER_topology_file_for_a_protein_plus_ligand_systemMolfacture, a tool in VMD. You will need the latest version of VMD to do this so either download and compile it yourself (which is pretty easy - honest!), or use my ... We now use a simple script to construct the topology and coordinate files with xleap:. -
Preparing an AMBER topology file for a protein plus ligand system -…
https://wikis.ch.cam.ac.uk/cuc3/wiki/index.php/Preparing_an_AMBER_topology_file_for_a_protein_plus_ligand_system6 Jan 2021: Molfacture, a tool in VMD. You will need the latest version of VMD to do this so either download and compile it yourself (which is pretty easy - honest!), or use my ... We now use a simple script to construct the topology and coordinate files with xleap:. -
Comprehensive Contents Page - Docswiki
https://wikis.ch.cam.ac.uk/ro-walesdocs/wiki/index.php/Comprehensive_Contents_PageJenkins CI - explains Jenkins, which we use to download our code and compile each of our targets with each of the compilers every night. - ... These are not linked anywhere on the website and require a username (wales) and password (group) to download:.
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