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cambridge crystallographic database
https://www-jmg.ch.cam.ac.uk/cil/SGTL/CCDC.html6 May 2024: university of cambridge. cambridge crystallographic database. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemi cal Information Laboratory. and this information is for historical interest only. Brief Introduction to the -
beilstein/crossfire
https://www-jmg.ch.cam.ac.uk/cil/beilstein.html6 May 2024: university of cambridge. beilstein/crossfire. Beilstein. This page is now obsolete. Beilstein is available to all UK academic institutions. The service runs from Manchester. New users should read the registration information. The software and -
cyclohexene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexene.html6 May 2024: university of cambridge. cyclohexene. SMILES. C1C=CCCC1. Canonical SMILES. C1CCC=CC1. InChI. InChI=1/C6H10/c1-2-4-6-5-3-1/h1-2H,3-6H2. -
ISIS/draw and ISIS/base
https://www-jmg.ch.cam.ac.uk/cil/SGTL/MDL/mdl.html6 May 2024: university of cambridge. ISIS/draw and ISIS/base. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemical Information Laboratory. and this information is for historical interest only. ISIS/Draw and ISIS/Base. ISIS/Draw may be -
reverse polish notation
https://www-jmg.ch.cam.ac.uk/cil/SGTL/rpn.html6 May 2024: university of cambridge. reverse polish notation. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemi cal Information Laboratory. and this information is for historical interest only. Reverse Polish Notation. Reverse Polish -
adamantane
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/adamantane.html6 May 2024: university of cambridge. adamantane. SMILES. C1(C2)CC(CC2C3)CC3C1. Canonical SMILES. C1C2CC3CC1CC(C2)C3. InChI. InChI=1/C10H16/c1-7-2-9-4-8(1)5-10(3-7)6-9/h7-10H,1-6H2/t7-,8+,9-,10+. -
cyclopentane
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclopentane.html6 May 2024: university of cambridge. cyclopentane. SMILES. C1CCCC1. Canonical SMILES. C1CCCC1. InChI. InChI=1/C5H10/c1-2-4-5-3-1/h1-5H2. AuxInfo=1/0/N:1,2,5,3,4/E:(1,2,3,4,5)/rA:5nCCCCC/rB:s1;s2;s3;s1s4;/rC:-.4125,-.6348,0;.4125,-.6348,0;.6674,.1498,0;0,.6348,0; -
decalin (cis)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cisdecalin.html6 May 2024: university of cambridge. decalin (cis). SMILES. [H][C@@]12[C@@](CCCC2)([H])CCCC1. Canonical SMILES. C1CCC2CCCCC2C1. InChI. InChI=1/C10H18/c1-2-6-10-8-4-3-7-9(10)5-1/h9-10H,1-8H2/t9-,10+. -
#sketchBINOL
https://www-jmg.ch.cam.ac.uk/publications/sketchBINOL.html6 May 2024: university of cambridge. sketchBINOL. How best to sketch BINOL, and BINOL-derived catalysts, to illustrate how its shape can transfer stereogenic information to substrates? The above diagram is consistent with the view of BINOL we have used in:. 2005 -
maestro
https://www-jmg.ch.cam.ac.uk/cil/maestro.html6 May 2024: university of cambridge. maestro. Documentation as PDF files in the directory: /usr/glea/schrodinger/docs/maestro5/pdf/. Maestro is a graphical user interface to both MacroModel and Jaguar. It is started by typing:. maestro. This command creates a -
american chemical society
https://www-jmg.ch.cam.ac.uk/data/c2k/cj/acs.html6 May 2024: university of cambridge. american chemical society. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
cycloheptane (conformation one)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cycloheptane.html6 May 2024: university of cambridge. cycloheptane (conformation one). SMILES. C1CCCCCC1. Canonical SMILES. C1CCCCCC1. InChI. InChI=1/C7H14/c1-2-4-6-7-5-3-1/h1-7H2. AuxInfo=1/0/N:1,2,7,3,6,4,5/E:(1,2,3,4,5,6,7)/rA:7nCCCCCCC/rB:s1;s2;s3;s4;s5;s1s6;/rC:-.7127,.5376 -
COMM
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/comm.html6 May 2024: university of cambridge. COMM. COMM. COMM. introduces a comment. The rest of the line is ignored. Acca and Acca documentation: 1996,1997 J M Goodman, Cambridge. Acca documentation may not be copied without the written permission of the author. -
INVT
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/invt.html6 May 2024: university of cambridge. INVT. INVT. This command takes no arguments. It inverts a whole molecule by negating the Z-coordinate. Acca and Acca documentation: 1996,1997 J M Goodman, Cambridge. Acca documentation may not be copied without the written -
Dolabriferol
https://www-jmg.ch.cam.ac.uk/publications/anie201109080.html6 May 2024: university of cambridge. Dolabriferol. In 1996, we predicted that it should be possible to make dolabriferol by this pathway, after a computational analysis of the many competing processes that could result from the rearrangement (Org. Lett. 2005, 7, -
DATM
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/datm.html6 May 2024: university of cambridge. DATM. DATM. DATM a. Delete atom number a. This command contains no checks for consistency in the resulting structure. Acca and Acca documentation: 1996,1997 J M Goodman, Cambridge. Acca documentation may not be copied -
DATT
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/datt.html6 May 2024: university of cambridge. DATT. DATT. DATT a. Delete all atoms of type a. This command contains no checks for consistency in the resulting structure. Acca and Acca documentation: 1996,1997 J M Goodman, Cambridge. Acca documentation may not be copied -
CATM
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/catm.html6 May 2024: university of cambridge. CATM. CATM. CATM a b. Change atom number a to atom type b. A list of MacroModel atom types is available. Acca and Acca documentation: 1996,1997 J M Goodman, Cambridge. Acca documentation may not be copied without the -
Instructions for the calculation of CP3
https://www-jmg.ch.cam.ac.uk/tools/nmr/instructions.html6 May 2024: university of cambridge. CP3 calculation. How do I calculate CP3? CP3 is a parameter which helps to assign structure and stereochemistry by comparing experimental and calculated NMR spectra. The calculation of CP3 is a three step process:. Enter -
chemists in the academic world
https://www-jmg.ch.cam.ac.uk/data/c2k/people/applet.html6 May 2024: university of cambridge. chemists in the academic world. Chemists in the Academic World. Sorry, your browser does not support Java. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
cycloheptane (conformation two)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cycloheptane2.html6 May 2024: university of cambridge. cycloheptane (conformation two). SMILES. C1CCCCCC1. Canonical SMILES. C1CCCCCC1. InChI. InChI=1/C7H14/c1-2-4-6-7-5-3-1/h1-7H2. AuxInfo=1/0/N:1,2,7,3,6,4,5/E:(1,2,3,4,5,6,7)/rA:7nCCCCCCC/rB:s1;s2;s3;s4;s5;s1s6;/rC:-.7127,.5376 -
DBND
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/dbnd.html6 May 2024: university of cambridge. DBND. DBND. DBND a b. This command breaks the bond between atoms a and b and fills the valency of each with a hydrogen, directed along the broken bond. This inevitably gives a rather strained structure. Acca and Acca -
LROT
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/lrot.html6 May 2024: university of cambridge. LROT. LROT. LROT a b c d. This command must be followed by four integers. The integers are atom numbers that define a torsion bond. All values of this angle will be listed to the log file. Acca and Acca documentation: -
practical four: molecular dynamics
https://www-jmg.ch.cam.ac.uk/cil/SGTL/prac4.html6 May 2024: university of cambridge. practical four: molecular dynamics. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemical Information Laboratory. and this information is for historical interest only. Practical Four: Molecular Dynamics -
SBCF
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/sbcf.html6 May 2024: university of cambridge. SBCF. SBCF. SBCF filename. This command gives the filename for a substructure constraints file. It is used with the CHNG command. There can only be one. SBCF. command in any command file, and so it can be anywhere in the file -
galactose
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/galactose.html6 May 2024: university of cambridge. galactose. Notes D-Galactose is a common naturally-occuring sugar. SMILES. O[C@H]1[C@@H](CO)O[C@H](O)[C@H](O)[C@H]1O. Canonical SMILES. InChI. InChI=1/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6+/m1/s1. -
decalin (trans)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/transdecalin.html6 May 2024: university of cambridge. decalin (trans). SMILES. [H][C@@]12[C@](CCCC2)([H])CCCC1. Canonical SMILES. C1CCC2CCCCC2C1. InChI. InChI=1/C10H18/c1-2-6-10-8-4-3-7-9(10)5-1/h9-10H,1-8H2/t9-,10-. -
HH2O
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/hh2o.html6 May 2024: university of cambridge. HH2O. HH2O. HH2O. This command takes the isolated oxygen atoms which are often found in PDB files, and adds hydrogens to them to form waters. It checks if there are isolated hydrogens within 1.1 Å and joins these up if two -
BNDO
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/bndo.html6 May 2024: university of cambridge. BNDO. BNDO. BNDO a b c. This command must be followed by three integers. The first two integers must be atom numbers, and the third integer is the new bond order which is required between them. A bond must already exist -
bicyclo[2.2.2]octane
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/bicyclooctane.html6 May 2024: university of cambridge. bicyclo[2.2.2]octane. SMILES. [H][C@@]1(CC2)CC[C@]2([H])CC1. Canonical SMILES. C1CC2CCC1CC2. InChI. InChI=1/C8H14/c1-2-8-5-3-7(1)4-6-8/h7-8H,1-6H2/t7-,8+. AuxInfo=1/0/N:8,4,5,7,1,3,6,2/E:(1,2,3,4,5,6)(7,8)/rA:10nCCCCCCCCHH/rB -
DEBG
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/debg.html6 May 2024: university of cambridge. DEBG. DEBG. DEBG. a. The. DEBG. command controls the amount of information being written to the. COMFL.log. file. Can only have one number for each. DEBG. command, but can have any number of DEBG lines. DEBG 1 Reading and -
DBLE
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/dble.html6 May 2024: university of cambridge. DBLE. DBLE. DBLE a b c d. This command replaces an sp3 atom with an sp2 atom. The first number is the atom number of an sp3 carbon atom, which will be turned into an sp2 carbon atom. The second and third numbers (b and c) -
Amino Acids
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/6 May 2024: university of cambridge. Amino Acids. Leu. L. (CH. 3. ). 2. CHCH. 2. Ile. I. CH. 3. CH. 2. CH(CH. 3. ). Tyr. Y. HOC. 6. H. 4. CH. 2. Trp. W. Indole-CH. 2. Thr. T. CH. 3. CH(OH). Met. M. CH. 3. SCH. 2. CH. 2. Asn. N. H. 2. NCOCH. 2. Gln. Q. H. 2. -
List of pictures
https://www-jmg.ch.cam.ac.uk/data/molecules/pictureindex.html6 May 2024: university of cambridge. List of pictures. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
macroModel update
https://www-jmg.ch.cam.ac.uk/cil/SGTL/NewBmin.html6 May 2024: university of cambridge. macroModel update. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemi cal Information Laboratory. and this information is for historical interest only. MacroModel Update. If you do not understand any -
cyclohexane (boat)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexaneboat.html6 May 2024: university of cambridge. cyclohexane (boat). SMILES. C1CCCCC1. Canonical SMILES. C1CCCCC1. InChI. InChI=1/C6H12/c1-2-4-6-5-3-1/h1-6H2. -
ROTA
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/rota.html6 May 2024: university of cambridge. ROTA. ROTA. ROTA a b theta. This command must be followed by two integers and a floating point number. The integers are atom numbers that define a torsion bond. This bond must not be cyclic, although the program does not -
ADDA
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/adda.html6 May 2024: university of cambridge. ADDA. ADDA. ADDA a b c d. This command must be followed by four integers. The integers are atom numbers. A new atom, of type 3, will be added at the centre of the atoms listed, and at the end of the MacroModel data file. The -
FLTD
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/fltd.html6 May 2024: university of cambridge. FLTD. FLTD. FLTD a b c maxdist. This command filters out all structures for which the two atoms numbered a and b are either above or below a certain distance apart. The. FLTD. command must be followed by three integers and -
FLIP
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/flip.html6 May 2024: university of cambridge. FLIP. FLIP. FLIP. a b c d e. FLIP. must be followed by five integers, defining how a chiral centre is to be changed. The first integer is the atom number of the centre to be inverted, the second and third are two atoms which -
SROT
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/srot.html6 May 2024: university of cambridge. SROT. SROT. SROT a b c d theta. This command must be followed by four integers and a floating point number. The integers are atom numbers that define a torsion bond. This bond must not be cyclic, although the program does -
alphabetical list of countries
https://www-jmg.ch.cam.ac.uk/data/c2k/c2knation.html6 May 2024: university of cambridge. alphabetical list of countries. c2k - Alphabetical List of Countries. Total number of countries: 138. Total number of departments: 1857. Democratic Republic of the Congo 1. United States of America 642. Zimbabwe 1. Goodman -
DROT
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/drot.html6 May 2024: university of cambridge. DROT. DROT. DROT a b c d theta1 theta2. This command does a crude conformation search, systematically twisting around two torsion angles. Twist a-b in increments of Theta1 and c-d in increments of Theta2 to create all -
countries in order of number of departments
https://www-jmg.ch.cam.ac.uk/data/c2k/c2knumber.html6 May 2024: university of cambridge. countries in order of number of departments. c2k - Countries in Order of Number of Departmnets. Total number of countries: 138. Total number of departments: 1857. United States of America 642. Democratic Republic. of the -
cyclohexa 1,3 diene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexa13diene.html6 May 2024: university of cambridge. cyclohexa 1,3 diene. SMILES. C1=CCCC=C1. Canonical SMILES. C1CC=CC=C1. InChI. InChI=1/C6H8/c1-2-4-6-5-3-1/h1-4H,5-6H2. -
cyclohexa 1,4 diene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexa14diene.html6 May 2024: university of cambridge. cyclohexa 1,4 diene. SMILES. C1C=CCC=C1. Canonical SMILES. C1C=CCC=C1. InChI. InChI=1/C6H8/c1-2-4-6-5-3-1/h1-2,5-6H,3-4H2. AuxInfo=1/0/N:2,3,1,4,6,5/E:(1,2,5,6)(3,4)/rA:6nCCCCCC/rB:s1;d2;s3;s4;s1d5;/rC:-.7145,.4125,0;-.7145,- -
List of structures
https://www-jmg.ch.cam.ac.uk/data/molecules/structureindex.html6 May 2024: university of cambridge. List of structures. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
cyclooctene (trans)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/transcyclooctene.html6 May 2024: university of cambridge. cyclooctene (trans). SMILES. C1=CCCCCCC/1. Canonical SMILES. C1CCCC=CCC1. InChI. InChI=1/C8H14/c1-2-4-6-8-7-5-3-1/h1-2H,3-8H2/b2-1+. AuxInfo=1/0/N:1,2,3,4,5,7,6,8/E:(1,2)(3,4)(5,6)(7,8)/rA:8nCCCCCCCC/rB:d1;s1;s2;s3;s5;s4;s6s7 -
index of names
https://www-jmg.ch.cam.ac.uk/data/molecules/nameindex.html6 May 2024: university of cambridge. index of names. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
notes for new users
https://www-jmg.ch.cam.ac.uk/cil/SGTL/newuser.html6 May 2024: university of cambridge. notes for new users. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemi cal Information Laboratory. and this information is for historical interest only. Notes for New Users. Your account will give you
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