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Coot: Model-building tools for Molecular Graphics
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/presentations/bgu/coot-2018-bgu.pdf22 Feb 2018: Slide 20. Slide 21. Slide 22. Slide 23. Slide 24. Slide 25. -
Comparing AceDRG vs CSD LIGANDS Meeting Sept 2017 Rob ...
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/presentations/2017_Sept_Ligands.pdf29 Sep 2017: 4OA: 4q0a. 4OA (CSD). 24. 4OA: 4q0a. 4OA (CSD). 25. 4OA: 4q0a. -
Paul EmsleyMRC Laboratory of Molecular Biology, Cambridge, UKJune…
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/Ligands-July-2015-v2.pdf16 Jul 2015: 108.00 model_angle: 122.80 sigma: 3.00 angle-devi 14.80 penalty-score: 24.34 angle O2 - C6 - C3 target: 108.00 model_angle: 122.76 sigma: 3.00 ... angle-devi 14.76 penalty-score: 24.19 angle C13 - C15 - C17 target: 120.00 model_angle: 133.33 sigma: 3.00 -
Using Coot for model building into EM maps:A tutorial ...
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/EM-Tutorial-Coot-PE.pdf8 Sep 2015: Aim for 24 rmsd. 4. Jiggle Fit. The model is too far outside the density for a simple rigid-body refinement to be suitable. -
Manipulating Ligands Using Coot with a bit of carbohydrates ...
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/coot-may-2017-ligands-madrid-mcs2017-csic.pdf10 May 2017: C6 - N1 target: 108.00 model_angle: 122.80 sigma: 3.00 angle-devi 14.80 penalty-score: 24.34 angle O2 - C6 - C3 target: 108.00 model_angle: 122.76 ... sigma: 3.00 angle-devi 14.76 penalty-score: 24.19 angle C13 - C15 - C17 target: 120.00 model_angle: -
Model-Building with Coot Adding N-linked Glycosylation& Demo Paul …
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/coot-may-2017-aca-new-orleans.pdf29 May 2017: 24/40. Refinement Stabilizers. Using Coot's Real Space Refinement – (in default mode). – ... Slide 20. Slide 21. Slide 22. Slide 23. Slide 24. Slide 25. -
Cryo-EM Model-Buildingwith Modern Coot Paul Emsley@ Ben Gurion…
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/coot-2020-nov-slac.pdf10 Nov 2020: Slide 23. Slide 24. Slide 25. Slide 26. Slide 27. Slide 28. -
Systematic and Statistical Analysis to Aid Improvement and Validation …
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/2014_Oct_LIGANDS.pdf10 Oct 2014: Completed in 24.8393 seconds. CalculaNng bond class staNsNcs. WriNng bond class staNsNcs file: bond_class_stats.txt Completed in 9.53772 seconds. -
MeganPalm
https://www2.mrc-lmb.cam.ac.uk/groups/wschafer/MeganPalm.pdf3 Dec 2005: 24. Figure 4: Ellipse egg model……………….……………………………. 25. Figure 5: Simplified ellipse egg model……………….….…….…………….…. ... width criteria (currently 7.5 pixels/24 µm) can be adjusted accordingly -
Thesis Chapter 0
https://www2.mrc-lmb.cam.ac.uk/groups/wschafer/Hardaker.pdf10 Jun 2008: UNIVERSITY OF CALIFORNIA, SAN DIEGO. Neural and molecular mechanisms. underlying behavioral state modulation in C. elegans. A thesis submitted in partial satisfaction of the. requirements for the degree Master of Science. in. Biology. by. Laura Anne
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