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petermr's blog | A Scientist and the Web | Page 204
https://blogs.ch.cam.ac.uk/pmr/page/204/17 Jan 2022: Anyone can add a new place just by browsing the map and clicking a link to the Wikipedia entry. ... So I’ll be asking why this is. The single fundamental requirement in eScience is that there is shared data. -
petermr's blog | A Scientist and the Web | Page 40
https://blogs.ch.cam.ac.uk/pmr/page/40/17 Jan 2022: Graduate Students. A seriously misused resource. Much of the innovation comes from third-year postgraduates and we need to give them expression. ... Publishers have no legal requirement to allow this and many don’t. -
petermr's blog | A Scientist and the Web | Page 2
https://blogs.ch.cam.ac.uk/pmr/page/2/17 Jan 2022: OK there would have to be two entries…. D: No there’s more. ... I am not going to impose any other non-legal requirement on my colleagues. Results that match 2 of 3 words
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https://blogs.ch.cam.ac.uk/pmr/tag/dtp/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/dtp/feed/index.xml17 Jan 2022: So it is wonderful to have a sponsor who says “we will help you to develop this code” and you can make it Open – indeed this is virtually a requirement.br / ... An important difference is that the NCI database relates to physical samples while many -
https://blogs.ch.cam.ac.uk/pmr/tag/nci/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/nci/feed/index.xml17 Jan 2022: So it is wonderful to have a sponsor who says “we will help you to develop this code” and you can make it Open – indeed this is virtually a requirement.br / ... An important difference is that the NCI database relates to physical samples while many -
https://blogs.ch.cam.ac.uk/pmr/tag/xml/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/xml/feed/index.xml17 Jan 2022: So it is wonderful to have a sponsor who says “we will help you to develop this code” and you can make it Open – indeed this is virtually a requirement.br / ... An important difference is that the NCI database relates to physical samples while many -
https://blogs.ch.cam.ac.uk/pmr/tag/jumbo/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/jumbo/feed/index.xml17 Jan 2022: So it is wonderful to have a sponsor who says “we will help you to develop this code” and you can make it Open – indeed this is virtually a requirement.br / ... An important difference is that the NCI database relates to physical samples while many -
Open Data in biomedical science | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/05/30/open-data-in-biomedical-science/17 Jan 2022: I would not be surprised to find that the requirements were very different in – say – chemistry or materials science. ... This entry was posted inBookmark theOne Response to Open Data in biomedical science. -
https://blogs.ch.cam.ac.uk/pmr/category/crystaleye/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/category/crystaleye/feed/index.xml17 Jan 2022: As I have been expressing all I want to do also is “- link to CrystalEye entries”. ... Each link points to an entry from which (a) the InChI and (b) the CompleteCML are available. -
About | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/about-2/17 Jan 2022: The typesetter has relatively little responsibility other than to interpret the requirement in a e-print medium rather than a digital one. -
Open Data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/17/open-data/17 Jan 2022: The license may impose some form of attribution and integrity requirements: see principle 5 (Attribution) and principle 6 (Integrity) below. ... There is no requirement for the Open Data provider to provide installation help for downloaders if the -
petermr's blog | A Scientist and the Web | Page 108
https://blogs.ch.cam.ac.uk/pmr/page/108/17 Jan 2022: Try browsing the entries or searching with “blue” – which will find blue crystals. ... Daniel’s planning to put 100,000 entries into the system and virtualise it. -
My Data or Our Data? | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2006/10/07/my-data-or-our-data/17 Jan 2022: So where are other subjects in this? I traditionally look to biosciences with envy for their open data and requirements to publish. ... In crystallography there is an enviable requirement to publish data alongside full-text articles. -
petermr's blog | A Scientist and the Web | Page 149
https://blogs.ch.cam.ac.uk/pmr/page/149/17 Jan 2022: each address a page is created (“entry HTML”) which acts like a container. ... Now imagine that a spider starts to download the entries and “finishes” a month later. -
What I said to the NIH | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2008/05/31/what-i-said-to-the-nih/17 Jan 2022: There is an urgent requirement in bioscience to use machines to extract information from the full-text of papers (“text-mining” mining and “data-mining”). ... Text-mining” and “data-mining” are hardly mentioned – if at all – in the -
FoX marches on | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/12/22/fox-marches-on/17 Jan 2022: Toby has been one of the pillars of supporting CML – there was no requirement to do so but he and colleagues (mainly in Earth Sciences) saw the value and used it ... This entry was posted in programming for scientists and taggedBookmark theLeave a Reply -
PP4_0.1: Repositories for Scientific Data | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2010/07/28/pp4_01-repositories-for-scientific-data/17 Jan 2022: Peter, You mention ‘open data’ twice in this blog entry, in the opening sentence and in the final sentence. ... In between you do not address how the extensive requirements can be achieved while continuing to provide open data. -
https://blogs.ch.cam.ac.uk/pmr/2007/11/07/open-nmr-nick-days-final-res…
https://blogs.ch.cam.ac.uk/pmr/2007/11/07/open-nmr-nick-days-final-results/feed/index.xml17 Jan 2022: I'm guessing that most of the entries come from rather old datasets - is that right? ... I’m guessing that most of the entries come from rather old datasets – is that right? -
https://blogs.ch.cam.ac.uk/pmr/2010/07/28/pp4_01-repositories-for-scie…
https://blogs.ch.cam.ac.uk/pmr/2010/07/28/pp4_01-repositories-for-scientific-data/feed/index.xml17 Jan 2022: In between you do not address how the extensive requirements can be achieved while continuing to provide open data. ... pPeter, You mention ‘open data’ twice in this blog entry, in the opening sentence and in the final sentence. -
petermr's blog | A Scientist and the Web | Page 182
https://blogs.ch.cam.ac.uk/pmr/page/182/17 Jan 2022: Without NMRShiftDB my current access to spectra is minimal. If I have 20,000 entries with 1% error that is an enormous advance. ... I would not be surprised to find that the requirements were very different in – say – chemistry or materials science. -
OA at Stirling | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2008/04/09/oa-at-stirling/17 Jan 2022: We are also building up a retrospective archive.” …. Michael White added: “We are hopeful of a very positive response from researchers to the requirement to self-archive, as they will benefit ... We had our 40th re-union last autumn). This entry -
https://blogs.ch.cam.ac.uk/pmr/tag/clarion/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/clarion/feed/index.xml17 Jan 2022: small"span style="color: #888888"The webbook has many thousands of entries for compounds. ... LOD has a number of requirements including/span/span/p ul li p style="margin-bottom: 0.21cm"span style="color: #888888"Open Data (not just accessible)/span/p -
Working with the NCI | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2008/02/04/working-with-the-nci/17 Jan 2022: An important difference is that the NCI database relates to physical samples while many entries in Pubchem do not). ... CML details will follow on the CMLBlog. This entry was posted inand taggedBookmark the2 Responses to Working with the NCI. -
Anyone for crystal mashups? | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/10/27/anyone-for-crystal-mashups/17 Jan 2022: The only requirement is that you have to be prepared to work with Open Data. ... But you do have to acknowledge the source. P. This entry was posted inBookmark the7 Responses to Anyone for crystal mashups? -
https://blogs.ch.cam.ac.uk/pmr/tag/cml/feed/index.xml
https://blogs.ch.cam.ac.uk/pmr/tag/cml/feed/index.xml17 Jan 2022: So it is wonderful to have a sponsor who says “we will help you to develop this code” and you can make it Open – indeed this is virtually a requirement.br / ... An important difference is that the NCI database relates to physical samples while many -
Elsevier's new API approach to Content Mining should be avoided…
https://blogs.ch.cam.ac.uk/pmr/2014/06/10/6054/17 Jan 2022: What is it and how do Elsevier’s systems accommodate this requirement? ... Under the UK legislation, publishers can use “reasonable measures to maintain the stability and security” of their networks, and so the [requirement to use] this API is -
Can Open Data be manipulated? | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/07/17/can-open-data-be-manipulated/17 Jan 2022: I don’t have answers in all cases. The following may meet many requirements:. ... This entry was posted inBookmark theOne Response to Can Open Data be manipulated? -
The Blue Obelisk | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2006/09/08/the-blue-obelisk/17 Jan 2022: knowledge. Each producer sees themselves at the centre of the universe and caters only for their own requirements, leading to a forest of “stovepipes” in the antipattern jargon. ... This entry was posted inBookmark theLeave a Reply. -
Wiley and eMolecules: Unacceptable | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/09/06/wiley-and-emolecules-unacceptable/17 Jan 2022: headers or sender address; “conspicuous” display of the postal address of the sender; and other minor requirements. ... If the spam fails to comply with any of these requirements, then it is illegal. -
SPECTRa – we've been blogged! | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/07/10/spectra-weve-been-blogged/17 Jan 2022: lab books, paper copies of spectra); a complex list of data file formats (particularly proprietary binary formats) are being used; there is significant ignorance regarding digital repositories; there is a requirement ... Watch Jim’s jackrabbit …). -
petermr's blog | A Scientist and the Web | Page 61
https://blogs.ch.cam.ac.uk/pmr/page/61/17 Jan 2022: People should want to put stuff in a repository. The want is almost always self-interest, or is driven by actual coercion (employment contract or legal requirements). ... PMR: This is rather close to vapourware. Five years of non-progress for my -
Advice on Open Notebook Technology | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/10/11/advice-on-open-notebook-technology/17 Jan 2022: In addition there are the usual requirements for a notebook or a scientific record. ... There will also presumably be a requirement to record thought processes and realisations as the process goes forward. -
Ross Mounce’s Visualization of “Gold” Open Access Rights and Prices | …
https://blogs.ch.cam.ac.uk/pmr/2012/08/31/4027/17 Jan 2022: Publishers have no legal requirement to allow this and many don’t. ... This entry was posted in Uncategorized. -
BioIT 2009 – What is semantic? | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2009/04/29/what-is-semantic/17 Jan 2022: Without question the management of identifiers is a key requirement in the C21. ... This entry was posted in Uncategorized. -
BioIT in Boston: What is Open? | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2009/04/27/bioit-in-boston-what-is-open/17 Jan 2022: and now the absolute requirement for Openness. NONE OF THE ABOVE CONDITIONS ARE OPTIONAL. ... to limit the amount downloaded. This is very frequent (“you may use a maximum of 100 entries”). -
Open Data WWW 2007 | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/05/09/open-data-www-2007/17 Jan 2022: requirements. Far less attention has been paid to the manner in which data can be used and reused, with only a few projects such as OpenStreetMap really challenging the traditional models ... This entry was posted inBookmark theOne Response to Open Data -
Open Data is coming | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2009/07/12/open-data-is-coming/17 Jan 2022: The only requirement is that the source of the data be acknowledged. ... Watch this blog…. This entry was posted in Uncategorized. -
petermr's blog | A Scientist and the Web | Page 136
https://blogs.ch.cam.ac.uk/pmr/page/136/17 Jan 2022: Someone pointed out that the height was given wrongly so I urged them to fix the entry – all I know is that we are relatively high up!). ... An important difference is that the NCI database relates to physical samples while many entries in Pubchem do -
Can I vote with my face covered? | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2010/05/06/can-i-vote-with-my-face-covered-2/17 Jan 2022: I have assumed that this is the legal requirement. However I have been alerted to an article from the BBC where election officials have stated that one can vote with ... But Rob Connelly, head of electoral services in Birmingham City Council, says that -
Ingenta: more comment | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/09/05/ingenta-more-comment/17 Jan 2022: And…. Academic publishers. Ingenta specializes in working with academic publishers to fulfill your online requirements. ... This entry was posted in open issues. -
petermr's blog | A Scientist and the Web | Page 14
https://blogs.ch.cam.ac.uk/pmr/page/14/17 Jan 2022: and structure content in ways that fit with their own needs, technologies and requirements. ... I’ve been going through the Elsevier entries, scraping the titles and Googling them. -
petermr's blog | A Scientist and the Web | Page 151
https://blogs.ch.cam.ac.uk/pmr/page/151/17 Jan 2022: As it happens it didn’t and the entry was needed because many others have contributed. ... AUTOMATICALLY during display – a NN-spectrum is calculated on-the-fly whenever you display an entry! -
Adding semantic markup with InChI | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/10/15/adding-semantic-markup-with-inchi/17 Jan 2022: give them the best service), and making submission as easy as possible is an absolute requirement. ... For a start there is an alternative system SMILES (which is a Simplified Molecular Input Line Entry System), a markdown for molecules if you like. -
Information-mining: Discussions with Wiley | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2012/03/09/information-mining-discussions-with-wiley/17 Jan 2022: I don’t have specific requirements. I have the technology to extract facts from Wiley publications and do scientific research on them and I’d like to do that. ... anything else, I’m afraid will be a NO for Hargreaves. This entry was posted in -
Thoughts about DCC and USQ | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2009/04/13/thoughts-about-dcc-and-usq/17 Jan 2022: I need to know more detail before I claim it is the answer to Chris’ requirements. ... This entry was posted in Uncategorized. -
Open NMR: update | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/11/11/open-nmr-update-2/17 Jan 2022: For a competition there would be stronger requirements – it is essential it is seen to be fair as reputation and commercial success might hang on the result. ... This entry was posted inBookmark theLeave a Reply. -
petermr's blog | A Scientist and the Web | Page 85
https://blogs.ch.cam.ac.uk/pmr/page/85/17 Jan 2022: In between you do not address how the extensive requirements can be achieved while continuing to provide open data. ... trivial for an author to establish a domain specific repository themselves (and even within domains, there are may diverse requirements -
petermr's blog | A Scientist and the Web
https://blogs.ch.cam.ac.uk/pmr/17 Jan 2022: While the non-profit organizations are nominally academic societal, in practice many are controlled by managers whose primary requirement is often to generate income as much as to spread knowledge. -
Panton Principles in Porto | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2009/05/19/panton-principles-in-porto/17 Jan 2022: Simply, the Principles should state that scientists wish to donate their data to the world community for any purpose and with no requirement other than attribution. ... If you have an insight join the discussion. This entry was posted in Uncategorized. -
open data: concepts from David Wiley | petermr's blog
https://blogs.ch.cam.ac.uk/pmr/2007/08/11/open-data-concepts-from-david-wiley/17 Jan 2022: It quickly becomes clear that the requirement to attribute the original author can be a subtle but no less real way of discriminating against persons or groups. ... We probably also need something on metadata. This entry was posted inBookmark theOne
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