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3 Apr 2015: Names = c("FOV", "userMatrix", "scale", "zoom")) par3d(op) plot3d(g123_aotu_pvlp,col="black") plot3d(g123, col="lightgrey"). Generate new score matrix based on neuron segments in AOTU and PVLP. ... gn2]). Hierarchical clustering of these neurons with new

There are number of things that are worth optimising when first starting to register a new kind of image.

Also new [[http://fiji.sc|Fiji]] based cross-platform GUI. [[http://flybrain.stanford.edu/R/|R analysis suite]] - A set of functions and scripts that I have written for analysing 3D

Whenever you start a new job it saves a. command file in this directory. ... You can open these in a text editor to slightly modify the commands, or double click them to re-run the command (a new Terminal window will open.

The output file of the avg_adm tool was used as the new template to which each image was registered. ... The avg_adm command was again called and its output was the new Intersex template.

On the Groupings panel select New Group and give it a name. ... The order is harder to change - one must redefine the groups from start to finish by selecting the group, creating a new group from it and then deleting the old one.

Top Tips ===== You may need to move the tracing toolbar to a new location (e.g.

Hit OK - this creates a small script in ''/yourregistrationfolder/commands'' Navigate to the ''/yourregistrationfolder/commands'' folder, you will find a new file called ''munger_todays date_time file created.command'', double

This is clearly a bit naff. So in the past what I did was manually multiply all y and z coordinates by -1 to end up with a new object that

igsreg=IGSParamsToIGSRegistration(AffineTransform9Dof). Then either write out a whole registration folder:. WriteIGSRegistrationFolder(igsreg,"testaffinereg.list"). which will make a new directory containing 2 files:. ... You can then go on to use