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Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/feed.php31 May 2024: odd_on_acq4&rev=1639657677&do=diff acq4 acquisition software for the new sensapex system provides a new challenge for running the XOP. -
NBLAST
flybrain.mrc-lmb.cam.ac.uk/si/nblast/www/7 Jun 2022: Such data demand new computational tools to search and organize neurons. -
start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/Jefferis Lab. This is the informal website for Greg Jefferis' Lab based in the Division of Neurobiology of the MRC Laboratory of Molecular Biology where Greg has an official page. We have strong links with the Department of Zoology of the University -
Finding the mAL Neurons
flybrain.mrc-lmb.cam.ac.uk/si/nblast/knitr/mAL.html3 Apr 2015: Let’s cluster those and see what we have. hcmal=hclustfc(mals). ## The "ward" method has been renamed to "ward.D"; note new "ward.D2". ... The "ward" method has been renamed to "ward.D"; note new "ward.D2". -
Jefferis Lab DokuWiki software:amira
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/feed.php?mode=list&ns=software:amira31 May 2024: rev=1386676785&do=diff Setting up AmiraDev to compile Felix's source hxskeletonize/hxgrapheditor Amira 5.2.2 Use Wizard to make a new amiradev folder e.g. -
NBLAST_search
flybrain.mrc-lmb.cam.ac.uk/si/nblast/knitr/NBLAST_search.html3 Apr 2015: R/R18C12_voxdims.am", format='hxlineset', F=T) #resave with new name #R18C12=read.neuron(f="/GD/LMBD/Papers/2012NBlast/R/R18C12_voxdims.am") -
Jefferis Lab DokuWiki warping_manual
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/feed.php?mode=list&ns=warping_manual31 May 2024: Whenever you start a new job it saves a. command file in this directory. ... diff There are number of things that are worth optimising when first starting to register a new kind of image. -
warping_manual:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:startOriginal gui to use CMTK on a Mac. Also new Fiji based cross-platform. -
software:amira:developer - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=software:amira:developerSetting up AmiraDev to compile Felix's source hxskeletonize/hxgrapheditor. Amira 5.2.2. Use Wizard to make a new amiradev folder e.g. -
pub:neuroanatomy:fru:faqs - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=pub:neuroanatomy:fru:faqsmachine). PC: eSATA for excellent performance on new PCs. USB2.0 slow, but very cheap and works on all machines.
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