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start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/Jefferis Lab. This is the informal website for Greg Jefferis' Lab based in the Division of Neurobiology of the MRC Laboratory of Molecular Biology where Greg has an official page. We have strong links with the Department of Zoology of the University -
warping_manual:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:startOriginal gui to use CMTK on a Mac. Also new Fiji based cross-platform. -
pub:neuroanatomy:fru:faqs - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=pub:neuroanatomy:fru:faqsmachine). PC: eSATA for excellent performance on new PCs. USB2.0 slow, but very cheap and works on all machines. -
software:amira:developer - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=software:amira:developerSetting up AmiraDev to compile Felix's source hxskeletonize/hxgrapheditor. Amira 5.2.2. Use Wizard to make a new amiradev folder e.g. -
pub:neuroanatomy:fru:template_brains - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=pub:neuroanatomy:fru:template_brainsThe output file of the avg_adm tool was used as the new template to which each image was registered. ... The avg_adm command was again called and its output was the new Intersex template. -
software:amira:grouping_surface_regions - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=software:amira:grouping_surface_regionsOn the Groupings panel select New Group and give it a name. ... The order is harder to change - one must redefine the groups from start to finish by selecting the group, creating a new group from it and then deleting the old one. -
software:amira:hxskeletonize - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=software:amira:hxskeletonizeTop Tips. You may need to move the tracing toolbar to a new location (e.g. -
warping_manual:registration_gui - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:registration_guiHit OK - this creates a small script in /yourregistrationfolder/commands. Navigate to the /yourregistrationfolder/commands folder, you will find a new file called munger_<todays date>_<time file created>.command, double -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=soft…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=software:amira:developerSetting up AmiraDev to compile Felix's source hxskeletonize/hxgrapheditor ====== Amira 5.2.2 ====== Use Wizard to make a new amiradev folder e.g. -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=star…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=startERC Consolidator Grant NeuroNex2 (see https://neuronex.org/news/13) Wellcome Trust (Collaborative Award, see http://www.zoo.cam.ac.uk/research/groups/connectomics) Wellcome Trust ([[http://virtualflybrain.org|VFB]] - Biomedical
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