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  2. DRAW: Clicking the Draw button opens a new graphics ...

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk8_drw.html
    8 Nov 2010: Note, point will only appear when appropriate. If it has disappeared, the next atom you create will be a new node. ... Add a new atom as described above with the RMB and allocate An- or Cat+ appropriately.
  3. Book 2. CHANGE- Move the cursor over the book ...

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk2.html
    8 Nov 2010: Sometimes, new or additional titles can be useful or old titles are left on displays which are irrelevant. ... This button activates a new window which allows you to renumber a molecule.
  4. A GUIDE TO THE XED MODELLING SYSTEM

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/
    8 Nov 2010: A GUIDE TO THE XED/COSMIC MODELLING SYSTEM. available on the SGI hardware. SECTION 1 THE GRAPHICAL INTERFACE. 1) Getting into the system on Silicon Graphics. 4)5) The BATCH Submission Procedure.. 8) Appendices. APPENDIX 1 A DRAWING EXERCISE.
  5. Book 4. HIDE & SHOW- Move the cursor over ...

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk4_5.html
    8 Nov 2010: Addition of hydrogens after removal does not re-instate the old hydrogens but constructs new hydrogen positions based on the computer's idea of their length and geometry. ... Clicking here removes any hydrogens if they are present. If no hydrogens are
  6. Book 8. No Cover - Always Open.....The heart of ...

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk8.html
    8 Nov 2010: Enter 'A' or 'a', then 4.0 (for vdW radii) after the prompt 'Enter new radius scale'). ... When you return to a new session, it should be as if you never left the previous one!
  7. Book 7. INPUT & OUTPUT- Before discussing the book ...

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk7.html
    8 Nov 2010: Move to Book 6 and open the cover. A new page is presented to you-. ... Move the cursor to Book 5. The new page entitled 'PLANE ALL ENTRIES' should be revealed.
  8. Book 6. PROCEDURES - (Before investigating Procedures, please be ...

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk6_fit.html
    8 Nov 2010: This button activates a new window which contains tools to allow you to fit two or more molecules together by a Least Squares routine. ... See Book 7 for reading two or more molecules). Assuming two or more molecules are displayed, activate the 'Fit
  9. SPIN BARRIER: The routine essentially produces Ramachandran plots but …

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbk6_sp.html
    8 Nov 2010: Clicking the Spin Barrier button generates a new window. The information and questions are hopefully self-explanatory. ... Generate a new window by clicking on the button. The dynamics takes the screen molecule as its input.
  10. 8) Appendices

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xa1_br.html
    8 Nov 2010: You will need to start a new node that is not bonded to the last atom you created. ... hit <Enter>) to the question 'Add partial charges''. A new question appears asking if you want to minimise some or all the atoms.
  11. 5) The BATCH Submission Procedure.

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/xed/xbt_ast.html
    8 Nov 2010: Lift the RMB on this item to activate. A new set of instructions appears in the Text Port. ... Enter a filename for the new file. This file will have the extension.

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