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  2. The MORPHEUS protein crystallization screen

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/morpheus%202009.pdf
    12 Nov 2009: LMB). The concept integrates several innovative approaches,such as chemically compatible mixes of potential ligands, new buffer systems andprecipitant mixes that also act as cryoprotectants. ... Both assumptions were a driving force behind my attemptsto
  3. 740 Research Paper Calcium triggers calcineurin-dependent synaptic…

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Marks_McMahon1998.pdf
    21 Mar 2003: We interpret theseresults to indicate that cyclosporin A is inhibiting theendocytic formation of new synaptic vesicles that normallyoccurs when the synaptosomes are depolarised. ... a single site that defines a new SH3 bindingconsensus sequence.
  4. Proc. Natl. Acad. Sci. USAVol. 94, pp. 9637–9642, September ...

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/9275175.pdf
    20 Apr 2002: Brünger, A. (1992) X-PLOR Manual (Yale Univ., New Haven,. CT).26. Laskowski, R.
  5. Proteins containing photosynthetic reaction centre domains modulate…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Nussbaum_Nat_micro_2024.pdf
    1 Mar 2024: All enzymes for DNA amplification (Phusion Polymerase) and plasmid construction (restriction enzymes, T4 DNA ligase and Quick CIP) were obtained from New England Biolabs (NEB) and used according to the
  6. FtsK in motion reveals its mechanism for double-stranded DNA…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/FtsK_Jean_2020_PNAS.pdf
    8 Jun 2020: J. Begg, S. J. Dewar, W. D. Donachie, A new Escherichia coli cell division gene, ftsK. ... Nucleic Acids Res. 32, 5260–5279 (2004). 28. J. Zivanov et al., New tools for automated high-resolution cryo-EM structure de-termination in RELION-3.
  7. PII: S0166-2236(98)01264-8

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Wigge_McMahon1998.pdf
    8 Jul 1998: 1997) J. Biol. Chem. 272, 11629–1163524 Folli, F. et al. (1993) New Engl.
  8. Prokaryotic cytoskeletons: protein filaments organizing small cells

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nrmicro.2017.153.pdf
    18 Jan 2018: as well as entirely new classes of filaments16–18, leading to an expanded concept of what a cytoskeleton is (BOX 1). ... In many rod‑shaped bacteria, dynamic MreB filaments control the synthesis of a new cell wall to maintain shape.
  9. Crystal Structure of the SMC Head Domain: An ABC ATPase with 900…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/TmSMChd%20JMB%202001.pdf
    20 Feb 2001: L. (1998).Crystallography and NMR system: a new softwaresuite for macromolecular structure determination.Acta Crystallog.
  10. The patterned assembly and stepwise Vps4-mediated disassembly of…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Hurtig%202023%20sciadv.ade5224.pdf
    16 Jul 2023: This makes itpossible to visualize new DNA synthesis through the incorporationof the thymidine analog EdU by fluorescence microscopy (29). ... Fragmentswere cloned into the pSVAaraFX backbone for Vps4E209Q and thepSVAaraHA-stop backbone for CdvBΔMIM2,
  11. Features critical for membrane binding revealed by DivIVA crystal…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/emboj201099a.pdf
    20 May 2010: Corresponding authors. LW Hamoen, The Centre for Bacterial CellBiology, Medical Science New Building, Medical School, NewcastleUniversity, Richardson Road, Newcastle upon Tyne NE2 4AX, UK.Tel.: þ44 191 208 3240; Fax: þ44 ... These were then removed
  12. MR_LMB

    https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/courses/lmb_crystallography_course_2013/lectures/MR_LMB.pdf
    11 Jun 2013: Molecular replacement. New structures from old. The Phase Problem. amplitude. phase.
  13. 30 Apr 2004 18:9 AR AR214-BB33-09.tex AR214-BB33-09.sgm…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/annrev2004.pdf
    1 May 2004: The SulA fold is related to a fragment of RecA, but this seems accidental andprobably only shows how nature reuses successful designs for new purposes. ... For GFP labeling, new genetic tools in mollicutes must be devel-oped for that purpose.
  14. The structure of bactofilin filaments reveals their mode of membrane…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Deng2019Natmicro.pdf
    26 Aug 2019: from genomic DNA and cloned into vector pET15b using Gibson assembly (New England Biolabs). ... plasmid pHis17 using Gibson assembly (New England Biolabs) with a stop codon before the C-terminal tag on the plasmid.
  15. doi:10.1016/j.biocel.2008.08.010

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/cytomotive2008Lowe.pdf
    17 Sep 2008: The adaptor protein ParR has ‘formin-like activity’, meaning. t actively participates in the addition of new ParM subunits to thend.
  16. mmi_4133.fm

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Spo0J%202004.pdf
    30 Jun 2004: Molecular Microbiology (2004). 53. (2), 419–432 doi:10.1111/j.1365-2958.2004.04133.x. 2004 Blackwell Publishing Ltd. Blackwell Science, LtdOxford, UKMMIMolecular Microbiology0950-382XBlackwell Publishing Ltd, 2004? 2004. 53. 2419432. Original
  17. Crystal Structure of the Two N-terminal Domains of g3p from…

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/10329170.pdf
    6 May 1999: digested with SI and NotI(New England Biolabs), and ligated into the SI and NotIdigested pUC119His6 (Holliger & Riechmann, 1997). ... Filamentous bacterio-phages. In The Bacteriophages (Calendar, R., ed.), pp.375-456, Plenum Press, New York.
  18. Current Developments in Coot for Macromolecular Model Building…

    https://www2.mrc-lmb.cam.ac.uk/coot/protein-science/Casanal_Lohkamp_Emsley_11112019-pe-2.pdf
    11 Nov 2019: Faster refinement goes hand in hand with the addition of new restraint types. ... library. The new mode of Acedrg allows the generation of bespoke chemical links,.
  19. DOI: 10.1126/science.1229091, 1334 (2012);338 Science et al.P.…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/sciencegayathri2012/Science-2012-Gayathri-1334-7.pdf
    7 Dec 2012: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005. ... new,higher steady state.
  20. BIO CHEM ISTR Y Structure of the SARS-CoV-2 RNA-dependent ...

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/SARS%20polym%202021%20e2021946118.full.pdf
    29 Aug 2021: High-resolution structure deter-mination may aid in these directions as new compounds are developed andtested as treatments for COVID-19. ... 9, 2. 021. 20. J. Zivanov et al., New tools for automated high-resolution cryo-EM structuredetermination in
  21. INVITED REVIEW Mechanosensory molecules and circuits in C. elegans ...

    https://www2.mrc-lmb.cam.ac.uk/groups/wschafer/2015-2.pdf
    10 Dec 2014: INVITED REVIEW. Mechanosensory molecules and circuits in C. elegans. William R. Schafer. Received: 3 June 2014 /Revised: 30 June 2014 /Accepted: 2 July 2014 /Published online: 23 July 2014# The Author(s) 2014. This article is published with open
  22. tutorial.dvi

    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/tutorial/tutorial-embo.pdf
    27 Aug 2015: Coot displays a Map Colour Selection window]. • Choose a new colour by clicking on the colour widgets. ... We want a CYS:. • Mutate & Auto Fit. • Click on an atom in the new ALA.
  23. Paul EmsleyMRC Laboratory of Molecular Biology, Cambridge, UKJune…

    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/Ligands-July-2015-v2.pdf
    16 Jul 2015: wwPDB Ligands. Year on year increase in the number of new entities. ... 6943 new ligand types (88%) are non-polymers. – LINKed ligands excluded.
  24. doi:10.1016/j.ceb.2003.11.005

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/cocb%202003.pdf
    27 Nov 2003: can be deliv-ered to the new cell wall and/or to remodel the newlyfused membrane. ... a mechanism wouldhelp ensure an even insertion of new lipid along thelength of the cell.
  25. doi:10.1016/j.cell.2008.11.004

    https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/55_Kang_SW_Cell_2008.pdf
    21 Nov 2008: redox perturbations), thereby providing a new tool for exploring the ER. ... This new molecular tool can now be combined with the vast collections of yeast strains (deletion, hypomorphic, overexpression, and other mutations) to reveal previously
  26. LETTERS A bacterial dynamin-like proteinHarry H. Low1 & Jan ...

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nature%20BDLP%202006.pdf
    28 Nov 2006: S. & Vallee, R. B.Molecular cloning of the microtubule-associated mechanochemical enzymedynamin reveals homology with a new family of GTP-binding proteins.
  27. 7400749.qxd

    https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/41_Ashok_A_EMBORep_2006.pdf
    19 Jun 2006: Intriguing new studiesindicate a potentially key role for MVB pathways in prion transmis-sion and metabolism, reinforcing the central importance of proteintransport pathways as the molecular basis of various diseases. ... Validation of thisprovocative
  28. 3919Commentary Introduction Kinesin motors use energy supplied by ATP …

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/JCScommentary.pdf
    31 Oct 2007: 1) The tethered, ADP-bound lead head is free to find a new binding site. ... N., Muller,J. and Mandelkow, E. (2000). A new look at the microtubule binding patterns ofdimeric kinesins.
  29. nature structural biology . volume 5 number 6 . june 1998

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nsb1998.pdf
    14 Jan 2002: Lloyd, C.W. Microtubules (Wiley-Liss, New York, 1993). 2. 3m. 4C. ... Hol, W.G. Crystal structure of glycosomal glyceraldehyde-3-. phosphate dehydrogenase from Leishmania mexicana: implications for structure-based drug design and new position for the
  30. CURRICULUM VITAE

    https://www2.mrc-lmb.cam.ac.uk/groups/bienz/wp-content/uploads/sites/23/BienzCV_March2024.pdf
    11 Apr 2024: signalling. EMBO J 18, 1630-1641. 60. Yu X, Waltzer L & Bienz M (1999) A new Drosophila APC homologue associated with. ... Science 316, 1619-1622. 93. Tran H, Hamada F, Schwarz-Romond T & Bienz M (2008) Trabid, a new positive regulator of.
  31. 73687_Trans

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/emboj201099s2.pdf
    28 Apr 2010: There are still questions about how the structure recognizes the very slight curvature of the polar membrane, but the new structural information greatly advances the discussion.
  32. Crystal Screen Lite™ is a complete reagent kit designed ...

    https://www2.mrc-lmb.cam.ac.uk/screens2/pdf/LMB06b.pdf
    26 Jun 2015: Discard the pipet tip, add a new pipet tip and pipet 1 ml of Crystal Screen Lite reagent 2 into reservoir A2.
  33. The current approach to initial crystallization screening of proteins …

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Gorrec_undersamplid_2013.pdf
    14 May 2013: structure determination and explains why the development of more. efficient crystallization screens is still challenging (McPherson &. Cudney, 2006). We are constantly testing new conditions and will. eventually integrate them into our
  34. rq5005

    https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/iucrjS20.pdf
    28 Jul 2020: L. D. & Kirshner, D. A. (1971). Nature New Biol. 231,.
  35. M410_8e 231..235

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Dynamin.pdf
    6 Mar 2001: single site that denes a new SH3 binding consensus sequence. J. ... Medicine, Oxford University, Roosevelt Drive, Oxford OX3 7BN, UK. The Oxford Centre for Molecular Sciences, New Chemistry, South Parks Road,Oxford OX1 3QT, UK These authors contributed
  36. Jason William Chin Page 1 of 18 MRC Laboratory ...

    https://www2.mrc-lmb.cam.ac.uk/ccsb/wp-content/uploads/2024/01/Chin-cv-26012024.pdf
    29 Jan 2024: 2008. 4: 232-234. [Featured in Nature 2008. 45: 868, Chemistry & Engineering News (ACS). ... 2006. 2: 254-258. [News & Views, Nature Chem. Biol. 2006. 2: 231-232].
  37. 1 Supplementary data to accompany paper: Mechanism of endophilin ...

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/GallopEndophilinEMBO/EndoSupMethods.pdf
    8 Jun 2006: oxyl-2,2,5,5-tetramethylpyrroline-3-methyl]-methanethiosulfonate) to generate the new side. chain R1 using a previously described protocol (Jao et al., 2004).
  38. MinCD cell division proteins form alternating copolymeric cytomotive…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/ncomms6341.pdf
    6 Dec 2014: analyses, we show that MinD activates MinC by forming a new class of alternating. ... We combined our new crystalstructure with the EcMinD dimer structure, revealing twointeresting features (Fig.
  39. pnas201313978 4601..4610

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/pnas2013duman.pdf
    23 Dec 2013: The G109K substitution has a dramatic ef-fect, because in the new crystals the protein filaments are absent,but dimers are still present (Fig. ... Construction of Plasmids for Protein Purification. pMal-C2X (New EnglandBiolabs) was used to clone and
  40. se060101051p

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/ford01.pdf
    3 Dec 2004: 17,4943 (1998). 35. A. G. W. Leslie, in Joint CCP4 and ESF-EACMB News-letter on Protein Crystallography No.
  41. PII: S0166-2236(03)00131-0

    https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/25_Hegde_RS_TINS_2003.pdf
    30 Jun 2003: Clearly, establishingany relationship between PrPSc and cyPrP represents aformidable challenge and will necessitate the developmentof new tools to readily detect and modulate cyPrPformation in precise and selective ways.
  42. se060101051p

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/AP180/Ap180_st.pdf
    3 Dec 2004: 17,4943 (1998). 35. A. G. W. Leslie, in Joint CCP4 and ESF-EACMB News-letter on Protein Crystallography No.
  43. DOI: 10.1126/science.1165322 , 1710 (2008); 322Science et al.Rachel…

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/19008417.pdf
    18 Dec 2008: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005.
  44. doi:10.1016/j.molcel.2006.07.020

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/HiroseMC2006.pdf
    8 Sep 2006: The new crystal structures are thought to resemblemyosin bound to an actin filament in the rigor state. ... domains binding to new sites on the MT. turn can affect the conformation of switch I and the nu-cleotide binding pocket near switch I.
  45. Organization of spines on the dendritesof Purkinje cellsJohn O’Brien…

    https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/pnas06.pdf
    25 Jul 2006: m (22). Hence, each spinehead is not only optimallyseparated from its neighbors in terms of efficient ‘‘scanning’’ ofthe surrounding space but also is positioned appropriately tomake synaptic contact with a new
  46. The EMBO Journal Vol.18 No.9 pp.2364–2371, 1999 Tubulin-like…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/EMBO%20paper%201999%20FtsZ.pdf
    20 Apr 1999: are more closely related to dinucleotide-bindingproteins (Rossmann fold proteins) than to classicalGTPases but should be treated as a new family of GTPases(Nogaleset al., 1998a).
  47. TBS may template.qxd

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/EMreview.pdf
    3 May 2002: J. Biol. Chem. 275, 38597–38604. 33 Darrouzet, E. et al. (2001) Large scale domainmovement in cytochrome bc1: a new device forelectron transfer in proteins.
  48. NPGRJ_NSMB_1158 1..8

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nsmbFtsK2006.pdf
    12 Oct 2006: culture in a New Brunswick Bioflo Pro fermentor and induced with 0.2% (w/v).
  49. 6. Image refinement Sjors Scheres EM course 2017 Agenda ...

    https://www2.mrc-lmb.cam.ac.uk/download/cryo-em17-lecture-06-refinement/?wpdmdl=18760&refresh=669fcea8306fa1721749160
    4 Oct 2017: calculate new 2D average as probability weighted averages. Reference-free 2D class averaging. ... The bad news • The experimental data alone is not enough to determine a unique solu7on! •
  50. Refined Structure of (alpha)(beta)-Tubulin at 3.5 A Resolution

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/jmb%20tubulin%20refinement.pdf
    3 Nov 2001: spond to the appearance of new small helices (H10,H20, H200, H30, H90 and H110). ... W., eds), vol. 1, pp. 3 and 32, JohnWiley & Sons, Inc., New York.
  51. Collaborative protein filaments

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/ghosal_embo_2015.pdf
    4 Jan 2016: A simple filament nomenclature. Since ever more filament systems with new architectures are being. ... CM (2014) Subpolar addition of new cell wall is directed by DivIVA in.

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