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Research Computing Services HPC Documentation — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/24 Jun 2024: Getting Started on CSD3. DAWN. Dawn - Intel GPU (PVC) Nodes. CSD3 User Guide. Applications. ». Research Computing Services HPC Documentation. Research Computing Services HPC Documentation. Important. Please read this page for important information -
Long jobs — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/long.html24 Jun 2024: Getting Started on CSD3. DAWN. Dawn - Intel GPU (PVC) Nodes. CSD3 User Guide. Applications. ». Long jobs. This page describes how suitable applications requiring unusually long execution times can be run on CSD3. Definition of long jobs. We define -
Connecting to CSD3 via TurboVNC (3D Visualisation) — CSD3 1.0…
https://docs.hpc.cam.ac.uk/hpc/user-guide/turbovnc.html24 Jun 2024: Important. The graphical visualisation nodes gpu-e-1,…, gpu-e-7 retired on Monday 10th July 2023 and were replaced by new NVIDIA L40 nodes gpu-r-1,…, gpu-r-10. ... startgfx showgfx killgfx nodename:displaynumber. As suggested by the names, startgfx -
Dawn - Intel GPU (PVC) Nodes — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/pvc.html24 Jun 2024: If you wish to recompile or test against this new environment, we recommend requesting an interactive node with command:. ... Please note that the ‘classic’ Intel compilers (icc, icpc and ifort) have been deprecated or removed; only the ‘new’ -
Interactive use — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/interactive.html24 Jun 2024: This command will create a new window if you have an X windows display (and X-forwarding is working to the login nodes), otherwise it will run in the current login ... Within the screen session, new terminals can be started with control-a c, with -
Using Python — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-tools/python.html24 Jun 2024: Virtualenv provides a method for installing new or upgraded Python packages as a user without the need to ask support to make changes centrally. ... Invoke Python as normal and the new components should be visible (as long as the virtualenv environment -
Ampere GPU Nodes — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/a100.html24 Jun 2024: Also known as Wilkes3. These new nodes entered general service in October 2021 and were expanded in July 2023. ... If you wish to recompile or test against this new environment, we recommend requesting an interactive node. -
CSD3 Planned Service Reductions October 2023 — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/planned_service_reduction.html24 Jun 2024: the work to install new compute hardware and cooling infrastructure in the data centre. -
LAMMPS Molecular Dynamics Simulator — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/lammps.html24 Jun 2024: The code is designed to be easy to modify or extend with new functionality. -
Ice Lake Nodes — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/icelake.html24 Jun 2024: These new nodes entered general service in October 2021 and were expanded in August 2023. -
Jupyter Notebooks — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/jupyter.html24 Jun 2024: It will then appear in NEW –> KERNEL_NAME. You can delete the kernel by running:. -
Login-Web Interface — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/login-web.html24 Jun 2024: After clicking Launch, a new session will be queued. Once the session is active your page will look like the image below:. ... You can choose Connect to Jupyter to start your session and create a New Python 3 notebook. -
MultiFactor Authentication (MFA) — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/mfa.html24 Jun 2024: This should create a new account in your app appearing as CSD3 (SSH Login). ... Both Google Authenticator or Microsoft Authenticator display a ‘’ icon for adding a new account:. -
CSD3 Host Keys — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/hostkeys.html24 Jun 2024: Provided the new fingerprint matches one of the new key fingerprints listed at From 1st February 2020, press Yes. ... Provided the new fingerprints match the new key fingerprints listed at From 1st February 2020, press Update. -
AlphaFold — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/software-packages/alphafold.html24 Jun 2024: This is a completely new model that was entered in CASP14 and published in Nature. ... input. directory. The dataset has been recently updated (November 2023) so scripts may not work without pointing to new versions of the files. -
Running Jobs on CSD3 — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/batch.html24 Jun 2024: usr/local/Cluster-Docs/SLURM. New user accounts also have symbolic links to template files in their home directories. -
WBIC-HPHI Platform End-of-Life — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/wbic.html24 Jun 2024: It will be necessary for users to apply for new accounts on the CSD3 cluster, which can be done via this form. ... This command will migrate everything under your home (/) into a new folder inside your CSD3 home directory (/wbic). -
File and I/O Management — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/io_management.html24 Jun 2024: Exceeding the soft limit is allowed for 7 days, but if the over-quota condition is not corrected after 7 days, creation of new files and directories on the filesystem will ... up-to-date with any backward-compatibility implications of each new release. -
Quick Start — CSD3 1.0 documentation
https://docs.hpc.cam.ac.uk/hpc/user-guide/quickstart.html24 Jun 2024: a new job or within an existing job scancel -> delete a job mybalance -> show current balance of core hour credits.
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