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TrakEM2 data sets
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/data.html18 Sep 2020: ImageJ plugin for morfological data mining, 3D modeling, and image stitching, registration, editing and annotation. -
TrakEM2
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/trakem2.html16 Oct 2020: TrakEM2 is now feature complete. New contextual menu items "Patch - Open image" and "Patch - Open original image". ... Some speed-ups by using the API better. New filters NormalizeLocalContrast (sort of like CLAHE but accelerated with integral images), -
TrakEM2 snapshots
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/snapshots.html18 Sep 2020: A general view, illustrating the creation of new, chained profiles via the "Duplicate, link and send to next/previous layer" method:. -
TrakEM2 - How to ...
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/howto.html18 Sep 2020: A new image will open within ImageJ, which you can save with standard File - Save menu. ... Patch> fixedPatches = new List<Patch>(); Thread task = AlignTask.alignPatchesTask( patches, fixedPatches ); if (null! = -
TrakEM2 users
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/users.html18 Sep 2020: ImageJ plugin for morphological data mining, segmentation, 3D modeling, image stitching, registration, editing and annotation. -
TrakEM2 User Manual
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/trakem2_manual.html18 Sep 2020: Select Plugins-> TrakEM2 -> New Project, and then optionally choose a proper template file, either as a. ... In the Layer Tree, right-click a layer and select add new layer set. -
TrakEM2 news
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/news.html18 Sep 2020: New command "Open original image" when an image is selected (same as shiftd). ... TrakEM2 0.8m is part of the new Fiji Madison release of Fiji. -
Fiji Programming Tutorial
https://syn.mrc-lmb.cam.ac.uk/acardona/fiji-tutorial/11 Apr 2023: Note: if the images are stacks, use StackStatistics instead.). This script introduces a few new concepts:. ... A new web browser window will open, with the web page corresponding to the class in question. -
TrakEM2 workshop Albert Cardona 1 Introduction 2 Motivation Our ...
https://syn.mrc-lmb.cam.ac.uk/acardona/INI-2008-2011/TrakEM2_ImageJConf_2008.pdf17 Sep 2008: So subsequent calls to ’s’ or ”Save”will overwrite that new. xml file. ... s e t T i t l e ( ”A new name” ) ; 12 Acknowledgments.
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