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PII: 0896-6273(89)90235-3
https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/neuron89.pdf11 Sep 2003: New channel proteins are being discovered and characterized, Superfamilies of voltage- and ligand-gated channels are being identified and ex- tended. ... without the energetically unfavored pro- cesses of creating substantial new surfaces or invoking -
Tutorial 4: Statistical Theory;Why is the Gaussian Distribution so ...
https://www2.mrc-lmb.cam.ac.uk/download/tutorial-4-statistical-theory/?wpdmdl=18816&refresh=668c008b49d98172045121120 Mar 2014: 7. Use a ‘for loop’ to iteratively recreate a new random Bin(100, 0.4) sample of100 observations and overplot the corresponding empirical density functionsonto the plot of the Normal density -
Bacterial actin: architecture of the ParMRC plasmidDNA partitioning…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/ParMRC%20Salje%202008%20EMBO.pdf4 Aug 2008: ParM filaments while allowing entry of new ATP-bound. monomers. We propose a processive mechanism by which. ... The binding of a new subunit. induces ATP hydrolysis in the previous subunit of the proto-. -
DOI: 10.1126/science.1135394 , 239 (2007); 317Science et al.Nabil…
https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/17626883.pdf8 Dec 2007: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005. -
Structure of the hexagonal surface layer on Caulobacter crescentus…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/s-layer-nmicrobiol201759.pdf6 Apr 2017: 3), requiring RsaA to adoptslightly different conformations. Furthermore, gaps in the latticewill be needed for insertion of new RsaA molecules on growingcells. ... The new culture was grown at 30 C for2–3 days. The culture was imaged using a -
©20 10 N atur e A mer ica, Inc. ...
https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/20081827.pdf2 Aug 2010: We devised a new expression and purification strategy by introducing a TEV protease. ... All propeller-shaped inhibitors create a new specificity pocket not present in the apo form of the enzyme. -
Supplementary Text & Figs
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Schmid_Nature2007Sup.pdf22 Aug 2007: be appropriately interpreted. Part 3: Clustered-hubs. Clustered-hubs are a new subtype of hubs not previously described. ... new subtype of hubs that we find in CME. These can be composed of proteins with. -
Filament structure and subcellular organization of the bacterial…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Liu_PNAS_crescentin_2024.pdf28 Apr 2024: contributed new reagents/analytic tools; Y.L. and J.L. analyzed data; and Y.L. -
MeganPalm
https://www2.mrc-lmb.cam.ac.uk/groups/wschafer/MeganPalm.pdf3 Dec 2005: to find out new search regions to detect all the eggs attached to the worm body. ... previously used for the egg detection test and 20 new normal wild type videos. -
Tomography_2017
https://www2.mrc-lmb.cam.ac.uk/download/cryo-em17-lecture-09-tomography/?wpdmdl=18762&refresh=668c0082e717017204512026 Oct 2017: Missing information due to discrete sampling. Data collection. Set new tilt angle. ... aligned toreference subtomograms. (aligned). averaged subtomograms(new reference). use new reference for alignmentiterate until reference is stable. -
doi:10.1128/mBio.00800-13. 4(6): .mBio. Midcell DNA Translocase FtsK…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/mbio2013bisicchia.pdf23 Dec 2013: CONTENT ALERTS. more>>article), Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this. -
Proteins containing photosynthetic reaction centre domains modulate…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Nussbaum_Nat_micro_2024.pdf1 Mar 2024: All enzymes for DNA amplification (Phusion Polymerase) and plasmid construction (restriction enzymes, T4 DNA ligase and Quick CIP) were obtained from New England Biolabs (NEB) and used according to the -
Journal of Visualized Experiments www.jove.com Copyright © 2018…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/JOVE2018.pdf19 Apr 2018: protein droplets (each row now requires 8 new microsyringesto avoid cross-contamination). -
Many bacterial plasmids are maintained at low copy number ...
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nrmicro2425.pdf14 Sep 2010: Filaments stabilized in this way continue to polymerize with the addition of new ParM subunits at both ParR–parC-capped ends, although the actual rate of elongation of an individual -
Activation of GCN2 by the ribosomal P-stalk
https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/PNAS_2019.pdf7 Mar 2019: New insight into a possible functional link be-tween GCN2 and ribosomes came from a recent analysis of micelacking both a specific neuronal tRNA (tRNAArgUCU) and theputative ribosome recycling factor GTPBP2 -
740 Research Paper Calcium triggers calcineurin-dependent synaptic…
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Marks_McMahon1998.pdf21 Mar 2003: We interpret theseresults to indicate that cyclosporin A is inhibiting theendocytic formation of new synaptic vesicles that normallyoccurs when the synaptosomes are depolarised. ... a single site that defines a new SH3 bindingconsensus sequence. -
The MORPHEUS protein crystallization screen
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/morpheus%202009.pdf12 Nov 2009: LMB). The concept integrates several innovative approaches,such as chemically compatible mixes of potential ligands, new buffer systems andprecipitant mixes that also act as cryoprotectants. ... Both assumptions were a driving force behind my attemptsto -
MR_LMB
https://www2.mrc-lmb.cam.ac.uk/download/molecular-replacement/?wpdmdl=18799&refresh=668c00876d8bf172045120711 Jun 2013: Molecular replacement. New structures from old. The Phase Problem. amplitude. phase. -
FtsK in motion reveals its mechanism for double-stranded DNA…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/FtsK_Jean_2020_PNAS.pdf8 Jun 2020: J. Begg, S. J. Dewar, W. D. Donachie, A new Escherichia coli cell division gene, ftsK. ... Nucleic Acids Res. 32, 5260–5279 (2004). 28. J. Zivanov et al., New tools for automated high-resolution cryo-EM structure de-termination in RELION-3. -
Prokaryotic cytoskeletons: protein filaments organizing small cells
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nrmicro.2017.153.pdf18 Jan 2018: as well as entirely new classes of filaments16–18, leading to an expanded concept of what a cytoskeleton is (BOX 1). ... In many rod‑shaped bacteria, dynamic MreB filaments control the synthesis of a new cell wall to maintain shape. -
The patterned assembly and stepwise Vps4-mediated disassembly of…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Hurtig%202023%20sciadv.ade5224.pdf16 Jul 2023: This makes itpossible to visualize new DNA synthesis through the incorporationof the thymidine analog EdU by fluorescence microscopy (29). ... Fragmentswere cloned into the pSVAaraFX backbone for Vps4E209Q and thepSVAaraHA-stop backbone for CdvBΔMIM2, -
Proc. Natl. Acad. Sci. USAVol. 94, pp. 9637–9642, September ...
https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/9275175.pdf20 Apr 2002: Brünger, A. (1992) X-PLOR Manual (Yale Univ., New Haven,. CT).26. Laskowski, R. -
The structure of bactofilin filaments reveals their mode of membrane…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Deng2019Natmicro.pdf26 Aug 2019: from genomic DNA and cloned into vector pET15b using Gibson assembly (New England Biolabs). ... plasmid pHis17 using Gibson assembly (New England Biolabs) with a stop codon before the C-terminal tag on the plasmid. -
Features critical for membrane binding revealed by DivIVA crystal…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/emboj201099a.pdf20 May 2010: Corresponding authors. LW Hamoen, The Centre for Bacterial CellBiology, Medical Science New Building, Medical School, NewcastleUniversity, Richardson Road, Newcastle upon Tyne NE2 4AX, UK.Tel.: þ44 191 208 3240; Fax: þ44 ... These were then removed -
30 Apr 2004 18:9 AR AR214-BB33-09.tex AR214-BB33-09.sgm…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/annrev2004.pdf1 May 2004: The SulA fold is related to a fragment of RecA, but this seems accidental andprobably only shows how nature reuses successful designs for new purposes. ... For GFP labeling, new genetic tools in mollicutes must be devel-oped for that purpose. -
PII: S0166-2236(98)01264-8
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Wigge_McMahon1998.pdf8 Jul 1998: 1997) J. Biol. Chem. 272, 11629–1163524 Folli, F. et al. (1993) New Engl. -
doi:10.1016/j.biocel.2008.08.010
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/cytomotive2008Lowe.pdf17 Sep 2008: The adaptor protein ParR has ‘formin-like activity’, meaning. t actively participates in the addition of new ParM subunits to thend. -
Crystal Structure of the SMC Head Domain: An ABC ATPase with 900…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/TmSMChd%20JMB%202001.pdf20 Feb 2001: L. (1998).Crystallography and NMR system: a new softwaresuite for macromolecular structure determination.Acta Crystallog. -
Current Developments in Coot for Macromolecular Model Building…
https://www2.mrc-lmb.cam.ac.uk/coot/protein-science/Casanal_Lohkamp_Emsley_11112019-pe-2.pdf11 Nov 2019: Faster refinement goes hand in hand with the addition of new restraint types. ... library. The new mode of Acedrg allows the generation of bespoke chemical links,. -
mmi_4133.fm
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Spo0J%202004.pdf30 Jun 2004: Molecular Microbiology (2004). 53. (2), 419–432 doi:10.1111/j.1365-2958.2004.04133.x. 2004 Blackwell Publishing Ltd. Blackwell Science, LtdOxford, UKMMIMolecular Microbiology0950-382XBlackwell Publishing Ltd, 2004? 2004. 53. 2419432. Original -
Crystal Structure of the Two N-terminal Domains of g3p from…
https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/10329170.pdf6 May 1999: digested with SI and NotI(New England Biolabs), and ligated into the SI and NotIdigested pUC119His6 (Holliger & Riechmann, 1997). ... Filamentous bacterio-phages. In The Bacteriophages (Calendar, R., ed.), pp.375-456, Plenum Press, New York. -
BIO CHEM ISTR Y Structure of the SARS-CoV-2 RNA-dependent ...
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/SARS%20polym%202021%20e2021946118.full.pdf29 Aug 2021: High-resolution structure deter-mination may aid in these directions as new compounds are developed andtested as treatments for COVID-19. ... 9, 2. 021. 20. J. Zivanov et al., New tools for automated high-resolution cryo-EM structuredetermination in -
DOI: 10.1126/science.1229091, 1334 (2012);338 Science et al.P.…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/sciencegayathri2012/Science-2012-Gayathri-1334-7.pdf7 Dec 2012: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005. ... new,higher steady state. -
MR_LMB
https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/courses/lmb_crystallography_course_2013/lectures/MR_LMB.pdf11 Jun 2013: Molecular replacement. New structures from old. The Phase Problem. amplitude. phase. -
tutorial.dvi
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/tutorial/tutorial-embo.pdf27 Aug 2015: Coot displays a Map Colour Selection window]. • Choose a new colour by clicking on the colour widgets. ... We want a CYS:. • Mutate & Auto Fit. • Click on an atom in the new ALA. -
DOI: 10.1126/science.1136985 , 120 (2007); 316Science et al.Maria C.…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Alonso_Science.pdf6 Apr 2007: The title SCIENCE is a. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005. -
Interactive Tools forCryo-EM Map Fitting Paul EmsleyMRC Laboratory of …
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/presentations/coot-cryoEM-2018-June-PSI.pdf19 Jun 2018: Yeast Mitochondrial Large Ribosomal Subunit. 19/06/18. New Ribosome Components. blue: conservedred: found in bothyellow: yeast only. ... Lots to see at 4 rmsd. Alpha Helix Placement. Scenario: Looking at a new map, not built with automatic tools: “I -
se060101051p
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/AP180/Ap180_st.pdf3 Dec 2004: 17,4943 (1998). 35. A. G. W. Leslie, in Joint CCP4 and ESF-EACMB News-letter on Protein Crystallography No. -
DOI: 10.1126/science.1165322 , 1710 (2008); 322Science et al.Rachel…
https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/19008417.pdf18 Dec 2008: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005. -
Organization of spines on the dendritesof Purkinje cellsJohn O’Brien…
https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/pnas06.pdf25 Jul 2006: m (22). Hence, each spinehead is not only optimallyseparated from its neighbors in terms of efficient ‘‘scanning’’ ofthe surrounding space but also is positioned appropriately tomake synaptic contact with a new -
Refined Structure of (alpha)(beta)-Tubulin at 3.5 A Resolution
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/jmb%20tubulin%20refinement.pdf3 Nov 2001: spond to the appearance of new small helices (H10,H20, H200, H30, H90 and H110). ... W., eds), vol. 1, pp. 3 and 32, JohnWiley & Sons, Inc., New York. -
TBS may template.qxd
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/EMreview.pdf3 May 2002: J. Biol. Chem. 275, 38597–38604. 33 Darrouzet, E. et al. (2001) Large scale domainmovement in cytochrome bc1: a new device forelectron transfer in proteins. -
NPGRJ_NSMB_1158 1..8
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nsmbFtsK2006.pdf12 Oct 2006: culture in a New Brunswick Bioflo Pro fermentor and induced with 0.2% (w/v). -
The EMBO Journal Vol.18 No.9 pp.2364–2371, 1999 Tubulin-like…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/EMBO%20paper%201999%20FtsZ.pdf20 Apr 1999: are more closely related to dinucleotide-bindingproteins (Rossmann fold proteins) than to classicalGTPases but should be treated as a new family of GTPases(Nogaleset al., 1998a). -
Collaborative protein filaments
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/ghosal_embo_2015.pdf4 Jan 2016: A simple filament nomenclature. Since ever more filament systems with new architectures are being. ... CM (2014) Subpolar addition of new cell wall is directed by DivIVA in. -
doi:10.1016/j.jmb.2007.08.056
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Oliva_FtsZ_JMB_2007.pdf11 Oct 2007: We propose a new model in whichlateral interactions help determine the curvature of protofilaments. ... Similarly, our new pair of AaFtsZ:GDPand AaFtsZ:8-morpholino-GTP show even smallerdifferences (rmsd 0.2 Å). -
ANALYSIS Integrating molecular and network biologyto decode…
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Schmid_Nature2007.pdf22 Aug 2007: c, Changing hubs: clathrin is recruited andpolymerization stabilizes the forming vesicle, displacing the AP2recruitment hub and becoming the new organizing hub. ... Clustered hubs’ are a new sub-type of hubs not previously described (Supplementary -
Cryo‐EM structure of the full‐length Lon protease from Thermus…
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Lon%20Coscia%202021%20FEBS.pdf14 Nov 2021: The new model containing a coiled-coil. a-helix describes map 2 well. ... Hagen WJH, Lindahl E and Scheres SHW (2018) New. tools for automated high-resolution cryo-EM structure. -
201010176 1..6
https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/PNAS-2010-Aylett-TubZ.pdf21 Oct 2010: The identificationof quadruple as well as double filaments posed a new question,however: Which filament is present in cells? ... Both formed filaments similar to those of native TubZ. We then reconstructed the new filaments in three dimensionsto reveal -
x16412u141
https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/MaoAP180-2001.pdf17 Mar 2003: cells. After induction with IPTG for 4 hr at 378C, cells were a new member of the AP-3 clathrin assembly protein family. ... Nature 347,N.S., et al. (1998). Crystallography and NMR system: a new software402–406.suite for macromolecular structure
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