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  2. PII: 0896-6273(89)90235-3

    https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/neuron89.pdf
    11 Sep 2003: New channel proteins are being discovered and characterized, Superfamilies of voltage- and ligand-gated channels are being identified and ex- tended. ... without the energetically unfavored pro- cesses of creating substantial new surfaces or invoking
  3. Tutorial 4: Statistical Theory;Why is the Gaussian Distribution so ...

    https://www2.mrc-lmb.cam.ac.uk/download/tutorial-4-statistical-theory/?wpdmdl=18816&refresh=668c008b49d981720451211
    20 Mar 2014: 7. Use a ‘for loop’ to iteratively recreate a new random Bin(100, 0.4) sample of100 observations and overplot the corresponding empirical density functionsonto the plot of the Normal density
  4. Bacterial actin: architecture of the ParMRC plasmidDNA partitioning…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/ParMRC%20Salje%202008%20EMBO.pdf
    4 Aug 2008: ParM filaments while allowing entry of new ATP-bound. monomers. We propose a processive mechanism by which. ... The binding of a new subunit. induces ATP hydrolysis in the previous subunit of the proto-.
  5. DOI: 10.1126/science.1135394 , 239 (2007); 317Science et al.Nabil…

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/17626883.pdf
    8 Dec 2007: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005.
  6. Structure of the hexagonal surface layer on Caulobacter crescentus…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/s-layer-nmicrobiol201759.pdf
    6 Apr 2017: 3), requiring RsaA to adoptslightly different conformations. Furthermore, gaps in the latticewill be needed for insertion of new RsaA molecules on growingcells. ... The new culture was grown at 30 C for2–3 days. The culture was imaged using a
  7. ©20 10 N atur e A mer ica, Inc. ...

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/20081827.pdf
    2 Aug 2010: We devised a new expression and purification strategy by introducing a TEV protease. ... All propeller-shaped inhibitors create a new specificity pocket not present in the apo form of the enzyme.
  8. Supplementary Text & Figs

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Schmid_Nature2007Sup.pdf
    22 Aug 2007: be appropriately interpreted. Part 3: Clustered-hubs. Clustered-hubs are a new subtype of hubs not previously described. ... new subtype of hubs that we find in CME. These can be composed of proteins with.
  9. Filament structure and subcellular organization of the bacterial…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Liu_PNAS_crescentin_2024.pdf
    28 Apr 2024: contributed new reagents/analytic tools; Y.L. and J.L. analyzed data; and Y.L.
  10. MeganPalm

    https://www2.mrc-lmb.cam.ac.uk/groups/wschafer/MeganPalm.pdf
    3 Dec 2005: to find out new search regions to detect all the eggs attached to the worm body. ... previously used for the egg detection test and 20 new normal wild type videos.
  11. Tomography_2017

    https://www2.mrc-lmb.cam.ac.uk/download/cryo-em17-lecture-09-tomography/?wpdmdl=18762&refresh=668c0082e71701720451202
    6 Oct 2017: Missing information due to discrete sampling. Data collection. Set new tilt angle. ... aligned toreference subtomograms. (aligned). averaged subtomograms(new reference). use new reference for alignmentiterate until reference is stable.
  12. doi:10.1128/mBio.00800-13. 4(6): .mBio. Midcell DNA Translocase FtsK…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/mbio2013bisicchia.pdf
    23 Dec 2013: CONTENT ALERTS. more>>article), Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this.
  13. Proteins containing photosynthetic reaction centre domains modulate…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Nussbaum_Nat_micro_2024.pdf
    1 Mar 2024: All enzymes for DNA amplification (Phusion Polymerase) and plasmid construction (restriction enzymes, T4 DNA ligase and Quick CIP) were obtained from New England Biolabs (NEB) and used according to the
  14. Journal of Visualized Experiments www.jove.com Copyright © 2018…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/JOVE2018.pdf
    19 Apr 2018: protein droplets (each row now requires 8 new microsyringesto avoid cross-contamination).
  15. Many bacterial plasmids are maintained at low copy number ...

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nrmicro2425.pdf
    14 Sep 2010: Filaments stabilized in this way continue to polymerize with the addition of new ParM subunits at both ParR–parC-capped ends, although the actual rate of elongation of an individual
  16. Activation of GCN2 by the ribosomal P-stalk

    https://www2.mrc-lmb.cam.ac.uk/groups/hegde/download/PNAS_2019.pdf
    7 Mar 2019: New insight into a possible functional link be-tween GCN2 and ribosomes came from a recent analysis of micelacking both a specific neuronal tRNA (tRNAArgUCU) and theputative ribosome recycling factor GTPBP2
  17. 740 Research Paper Calcium triggers calcineurin-dependent synaptic…

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Marks_McMahon1998.pdf
    21 Mar 2003: We interpret theseresults to indicate that cyclosporin A is inhibiting theendocytic formation of new synaptic vesicles that normallyoccurs when the synaptosomes are depolarised. ... a single site that defines a new SH3 bindingconsensus sequence.
  18. The MORPHEUS protein crystallization screen

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/morpheus%202009.pdf
    12 Nov 2009: LMB). The concept integrates several innovative approaches,such as chemically compatible mixes of potential ligands, new buffer systems andprecipitant mixes that also act as cryoprotectants. ... Both assumptions were a driving force behind my attemptsto
  19. MR_LMB

    https://www2.mrc-lmb.cam.ac.uk/download/molecular-replacement/?wpdmdl=18799&refresh=668c00876d8bf1720451207
    11 Jun 2013: Molecular replacement. New structures from old. The Phase Problem. amplitude. phase.
  20. FtsK in motion reveals its mechanism for double-stranded DNA…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/FtsK_Jean_2020_PNAS.pdf
    8 Jun 2020: J. Begg, S. J. Dewar, W. D. Donachie, A new Escherichia coli cell division gene, ftsK. ... Nucleic Acids Res. 32, 5260–5279 (2004). 28. J. Zivanov et al., New tools for automated high-resolution cryo-EM structure de-termination in RELION-3.
  21. Prokaryotic cytoskeletons: protein filaments organizing small cells

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nrmicro.2017.153.pdf
    18 Jan 2018: as well as entirely new classes of filaments16–18, leading to an expanded concept of what a cytoskeleton is (BOX 1). ... In many rod‑shaped bacteria, dynamic MreB filaments control the synthesis of a new cell wall to maintain shape.
  22. The patterned assembly and stepwise Vps4-mediated disassembly of…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Hurtig%202023%20sciadv.ade5224.pdf
    16 Jul 2023: This makes itpossible to visualize new DNA synthesis through the incorporationof the thymidine analog EdU by fluorescence microscopy (29). ... Fragmentswere cloned into the pSVAaraFX backbone for Vps4E209Q and thepSVAaraHA-stop backbone for CdvBΔMIM2,
  23. Proc. Natl. Acad. Sci. USAVol. 94, pp. 9637–9642, September ...

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/9275175.pdf
    20 Apr 2002: Brünger, A. (1992) X-PLOR Manual (Yale Univ., New Haven,. CT).26. Laskowski, R.
  24. The structure of bactofilin filaments reveals their mode of membrane…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Deng2019Natmicro.pdf
    26 Aug 2019: from genomic DNA and cloned into vector pET15b using Gibson assembly (New England Biolabs). ... plasmid pHis17 using Gibson assembly (New England Biolabs) with a stop codon before the C-terminal tag on the plasmid.
  25. Features critical for membrane binding revealed by DivIVA crystal…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/emboj201099a.pdf
    20 May 2010: Corresponding authors. LW Hamoen, The Centre for Bacterial CellBiology, Medical Science New Building, Medical School, NewcastleUniversity, Richardson Road, Newcastle upon Tyne NE2 4AX, UK.Tel.: þ44 191 208 3240; Fax: þ44 ... These were then removed
  26. 30 Apr 2004 18:9 AR AR214-BB33-09.tex AR214-BB33-09.sgm…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/annrev2004.pdf
    1 May 2004: The SulA fold is related to a fragment of RecA, but this seems accidental andprobably only shows how nature reuses successful designs for new purposes. ... For GFP labeling, new genetic tools in mollicutes must be devel-oped for that purpose.
  27. PII: S0166-2236(98)01264-8

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Wigge_McMahon1998.pdf
    8 Jul 1998: 1997) J. Biol. Chem. 272, 11629–1163524 Folli, F. et al. (1993) New Engl.
  28. doi:10.1016/j.biocel.2008.08.010

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/cytomotive2008Lowe.pdf
    17 Sep 2008: The adaptor protein ParR has ‘formin-like activity’, meaning. t actively participates in the addition of new ParM subunits to thend.
  29. Crystal Structure of the SMC Head Domain: An ABC ATPase with 900…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/TmSMChd%20JMB%202001.pdf
    20 Feb 2001: L. (1998).Crystallography and NMR system: a new softwaresuite for macromolecular structure determination.Acta Crystallog.
  30. Current Developments in Coot for Macromolecular Model Building…

    https://www2.mrc-lmb.cam.ac.uk/coot/protein-science/Casanal_Lohkamp_Emsley_11112019-pe-2.pdf
    11 Nov 2019: Faster refinement goes hand in hand with the addition of new restraint types. ... library. The new mode of Acedrg allows the generation of bespoke chemical links,.
  31. mmi_4133.fm

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Spo0J%202004.pdf
    30 Jun 2004: Molecular Microbiology (2004). 53. (2), 419–432 doi:10.1111/j.1365-2958.2004.04133.x. 2004 Blackwell Publishing Ltd. Blackwell Science, LtdOxford, UKMMIMolecular Microbiology0950-382XBlackwell Publishing Ltd, 2004? 2004. 53. 2419432. Original
  32. Crystal Structure of the Two N-terminal Domains of g3p from…

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/10329170.pdf
    6 May 1999: digested with SI and NotI(New England Biolabs), and ligated into the SI and NotIdigested pUC119His6 (Holliger & Riechmann, 1997). ... Filamentous bacterio-phages. In The Bacteriophages (Calendar, R., ed.), pp.375-456, Plenum Press, New York.
  33. BIO CHEM ISTR Y Structure of the SARS-CoV-2 RNA-dependent ...

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/SARS%20polym%202021%20e2021946118.full.pdf
    29 Aug 2021: High-resolution structure deter-mination may aid in these directions as new compounds are developed andtested as treatments for COVID-19. ... 9, 2. 021. 20. J. Zivanov et al., New tools for automated high-resolution cryo-EM structuredetermination in
  34. DOI: 10.1126/science.1229091, 1334 (2012);338 Science et al.P.…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/sciencegayathri2012/Science-2012-Gayathri-1334-7.pdf
    7 Dec 2012: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005. ... new,higher steady state.
  35. MR_LMB

    https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/courses/lmb_crystallography_course_2013/lectures/MR_LMB.pdf
    11 Jun 2013: Molecular replacement. New structures from old. The Phase Problem. amplitude. phase.
  36. tutorial.dvi

    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/tutorial/tutorial-embo.pdf
    27 Aug 2015: Coot displays a Map Colour Selection window]. • Choose a new colour by clicking on the colour widgets. ... We want a CYS:. • Mutate & Auto Fit. • Click on an atom in the new ALA.
  37. DOI: 10.1126/science.1136985 , 120 (2007); 316Science et al.Maria C.…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Alonso_Science.pdf
    6 Apr 2007: The title SCIENCE is a. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005.
  38. Interactive Tools forCryo-EM Map Fitting Paul EmsleyMRC Laboratory of …

    https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/files/presentations/coot-cryoEM-2018-June-PSI.pdf
    19 Jun 2018: Yeast Mitochondrial Large Ribosomal Subunit. 19/06/18. New Ribosome Components. blue: conservedred: found in bothyellow: yeast only. ... Lots to see at 4 rmsd. Alpha Helix Placement. Scenario: Looking at a new map, not built with automatic tools: “I
  39. se060101051p

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/AP180/Ap180_st.pdf
    3 Dec 2004: 17,4943 (1998). 35. A. G. W. Leslie, in Joint CCP4 and ESF-EACMB News-letter on Protein Crystallography No.
  40. DOI: 10.1126/science.1165322 , 1710 (2008); 322Science et al.Rachel…

    https://www2.mrc-lmb.cam.ac.uk/groups/rlw/download/publications/19008417.pdf
    18 Dec 2008: The title. CopyrightAmerican Association for the Advancement of Science, 1200 New York Avenue NW, Washington, DC 20005.
  41. Organization of spines on the dendritesof Purkinje cellsJohn O’Brien…

    https://www2.mrc-lmb.cam.ac.uk/groups/nu/pdf/pnas06.pdf
    25 Jul 2006: m (22). Hence, each spinehead is not only optimallyseparated from its neighbors in terms of efficient ‘‘scanning’’ ofthe surrounding space but also is positioned appropriately tomake synaptic contact with a new
  42. Refined Structure of (alpha)(beta)-Tubulin at 3.5 A Resolution

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/jmb%20tubulin%20refinement.pdf
    3 Nov 2001: spond to the appearance of new small helices (H10,H20, H200, H30, H90 and H110). ... W., eds), vol. 1, pp. 3 and 32, JohnWiley & Sons, Inc., New York.
  43. TBS may template.qxd

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/EMreview.pdf
    3 May 2002: J. Biol. Chem. 275, 38597–38604. 33 Darrouzet, E. et al. (2001) Large scale domainmovement in cytochrome bc1: a new device forelectron transfer in proteins.
  44. NPGRJ_NSMB_1158 1..8

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/nsmbFtsK2006.pdf
    12 Oct 2006: culture in a New Brunswick Bioflo Pro fermentor and induced with 0.2% (w/v).
  45. The EMBO Journal Vol.18 No.9 pp.2364–2371, 1999 Tubulin-like…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/EMBO%20paper%201999%20FtsZ.pdf
    20 Apr 1999: are more closely related to dinucleotide-bindingproteins (Rossmann fold proteins) than to classicalGTPases but should be treated as a new family of GTPases(Nogaleset al., 1998a).
  46. Collaborative protein filaments

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/ghosal_embo_2015.pdf
    4 Jan 2016: A simple filament nomenclature. Since ever more filament systems with new architectures are being. ... CM (2014) Subpolar addition of new cell wall is directed by DivIVA in.
  47. doi:10.1016/j.jmb.2007.08.056

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Oliva_FtsZ_JMB_2007.pdf
    11 Oct 2007: We propose a new model in whichlateral interactions help determine the curvature of protofilaments. ... Similarly, our new pair of AaFtsZ:GDPand AaFtsZ:8-morpholino-GTP show even smallerdifferences (rmsd 0.2 Å).
  48. ANALYSIS Integrating molecular and network biologyto decode…

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/Schmid_Nature2007.pdf
    22 Aug 2007: c, Changing hubs: clathrin is recruited andpolymerization stabilizes the forming vesicle, displacing the AP2recruitment hub and becoming the new organizing hub. ... Clustered hubs’ are a new sub-type of hubs not previously described (Supplementary
  49. Cryo‐EM structure of the full‐length Lon protease from Thermus…

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/Lon%20Coscia%202021%20FEBS.pdf
    14 Nov 2021: The new model containing a coiled-coil. a-helix describes map 2 well. ... Hagen WJH, Lindahl E and Scheres SHW (2018) New. tools for automated high-resolution cryo-EM structure.
  50. 201010176 1..6

    https://www2.mrc-lmb.cam.ac.uk/groups/JYL/PDF/PNAS-2010-Aylett-TubZ.pdf
    21 Oct 2010: The identificationof quadruple as well as double filaments posed a new question,however: Which filament is present in cells? ... Both formed filaments similar to those of native TubZ. We then reconstructed the new filaments in three dimensionsto reveal
  51. x16412u141

    https://www2.mrc-lmb.cam.ac.uk/groups/hmm/publica/MaoAP180-2001.pdf
    17 Mar 2003: cells. After induction with IPTG for 4 hr at 378C, cells were a new member of the AP-3 clathrin assembly protein family. ... Nature 347,N.S., et al. (1998). Crystallography and NMR system: a new software402–406.suite for macromolecular structure

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