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  2. 24 Jun 2024: Getting Started on CSD3. DAWN. Dawn - Intel GPU (PVC) Nodes. CSD3 User Guide. Applications. ». Research Computing Services HPC Documentation. Research Computing Services HPC Documentation. Important. Please read this page for important information
  3. User Onboarding — Secure Research Computing Platform Documentation…

    https://docs.hpc.cam.ac.uk/srcp/user-onboarding/index.html
    17 May 2024: This section describes how a new user requests access through SRCP Request User Access form, and is added to an SRCP Platform. ... To gain access to an SRCP Platform a new user has to read and accept policies governing the service by completing the SRCP
  4. Frequently Asked Questions — Research Storage Documentation…

    https://docs.hpc.cam.ac.uk/storage/faq/index.html
    5 Feb 2024: Following on from this further new storage services will be developed for colleges, departments, institutes and people working in administrative roles.
  5. Training modules — RCC Documentation 0.2-beta documentation

    https://docs.hpc.cam.ac.uk/cloud/labs/99-training.html
    4 Jun 2019: Create container and copy original tetris code. Create a new volume and attach it to the running instance.
  6. Connecting to CSD3 via TurboVNC (3D Visualisation) — CSD3 1.0…

    https://docs.hpc.cam.ac.uk/hpc/user-guide/turbovnc.html
    24 Jun 2024: Important. The graphical visualisation nodes gpu-e-1,…, gpu-e-7 retired on Monday 10th July 2023 and were replaced by new NVIDIA L40 nodes gpu-r-1,…, gpu-r-10. ... startgfx showgfx killgfx nodename:displaynumber. As suggested by the names, startgfx
  7. 17 May 2024: Move or copy the data across to the new directories. . ... At the top level of the project, the manager will need to add a new directory. .
  8. RDS groups and permissions — Research Storage Documentation…

    https://docs.hpc.cam.ac.uk/storage/rds/permissions.html
    5 Feb 2024: These give the following permissions;. Managers - read/write access to all data, able to create new directories at the top level of the project. ... The lines starting with. default:. are the permissions which any new directory created will inherit.
  9. 1. Agenda — RCC Documentation 0.2-beta documentation

    https://docs.hpc.cam.ac.uk/cloud/background/00-welcome.html
    4 Jun 2019: You should be able to deploy new services from scratch, migrate existing services, and extend on-premises services into OpenStack projects.
  10. Dawn - Intel GPU (PVC) Nodes — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/pvc.html
    24 Jun 2024: If you wish to recompile or test against this new environment, we recommend requesting an interactive node with command:. ... Please note that the ‘classic’ Intel compilers (icc, icpc and ifort) have been deprecated or removed; only the ‘new
  11. Preparing Your Phone for Two Factor Authentication — Secure Research…

    https://docs.hpc.cam.ac.uk/srcp/2fa/get-token.html
    17 May 2024: Once the Client has approved the token reset request and the User has demonstrated ownership of their password the Helpdesk will issue a new Private token.
  12. Security — Research Storage Documentation documentation

    https://docs.hpc.cam.ac.uk/storage/rfs/sundries.html
    5 Feb 2024: For news, current system status and documentation please visit the Research File Share Homepage.
  13. 1. Exploring the web interface — RCC Documentation 0.2-beta…

    https://docs.hpc.cam.ac.uk/cloud/userguide/01-horizon.html
    4 Jun 2019: You can select any image from the list and launch a new instance. . ... In the Access and Security tab, you will be able to manage Security Groups, create new Key Pairs for use in accessing spawned instances and manage assigned or reserved Floating IP
  14. Long jobs — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/long.html
    24 Jun 2024: Getting Started on CSD3. DAWN. Dawn - Intel GPU (PVC) Nodes. CSD3 User Guide. Applications. ». Long jobs. This page describes how suitable applications requiring unusually long execution times can be run on CSD3. Definition of long jobs. We define
  15. Usage Quotas — Research Storage Documentation documentation

    https://docs.hpc.cam.ac.uk/storage/rcs/sundries.html
    5 Feb 2024: For news, current system status and documentation please visit the Research Cold Store Homepage.
  16. Overview — Secure Research Computing Platform Documentation…

    https://docs.hpc.cam.ac.uk/srcp/vhpc/data-management/overview.html
    17 May 2024: An SRCP User needs to connect to the DMS and write new data to their own upload directory over SFTP.
  17. 3. Our Services — RCC Documentation 0.2-beta documentation

    https://docs.hpc.cam.ac.uk/cloud/background/02-introduction.html
    4 Jun 2019: If an issue is encountered, you should deploy a new replacement instance, rather than spending time troubleshooting the failures. ... Before proceeding, it is recommended you become familiar with some of the OpenStack-specific terminology that a new user
  18. Ampere GPU Nodes — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/a100.html
    24 Jun 2024: Also known as Wilkes3. These new nodes entered general service in October 2021 and were expanded in July 2023. ... If you wish to recompile or test against this new environment, we recommend requesting an interactive node.
  19. Permissions — Research Storage Documentation documentation

    https://docs.hpc.cam.ac.uk/storage/rfs/acl.html
    5 Feb 2024: When setting up a new project from scratch, the Data Owner or a Manager will need to create the top level directories and set the required permissions on them to allow
  20. Interactive use — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/interactive.html
    24 Jun 2024: This command will create a new window if you have an X windows display (and X-forwarding is working to the login nodes), otherwise it will run in the current login ... Within the screen session, new terminals can be started with control-a c, with
  21. SRCPS User Security Policy — Secure Research Computing Platform…

    https://docs.hpc.cam.ac.uk/srcp/isms-docs/security-policy.html
    17 May 2024: Changes in access to the SRCPS, e.g. a new member of staff requires access for an existing tenancy, must be authorised by the Client or Platform Manager.
  22. MacOS — Research Storage Documentation documentation

    https://docs.hpc.cam.ac.uk/storage/rfs/accessing-rfs/macos.html
    5 Feb 2024: Once the drive is mounted using this new path the user will see a list of all the projects they have access to. ... In the new pop-up window select Connect As: Registered user and specify your UIS username and password in the following way:. .
  23. 3. Computing service: OpenStack Nova — RCC Documentation 0.2-beta…

    https://docs.hpc.cam.ac.uk/cloud/userguide/03-nova.html
    4 Jun 2019: snapshot is copied into a new, persistent Cinder volume which is subsequently attached as the root disk for the instance. ... To deploy a new intance in OpenStack, you basicaly need to follow this workflow:.
  24. Using Python — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/software-tools/python.html
    24 Jun 2024: Virtualenv provides a method for installing new or upgraded Python packages as a user without the need to ask support to make changes centrally. ... Invoke Python as normal and the new components should be visible (as long as the virtualenv environment
  25. Backups & Redundancy — Research Storage Documentation…

    https://docs.hpc.cam.ac.uk/storage/rfs/snapshots.html
    5 Feb 2024: 10 hourly_2022-06-28_13:10 SIQ-23a11f77353771d5c270daa29f95b67b-new hourly_2022-06-28_01:10 hourly_2022-06-28_14:10 daily_2022-06-22_02:15 ... Double-clicking on any of these entries, will open a new File explorer window that then let’s you browse the
  26. 6. RCSIS Service Level Agreement — RCC Documentation 0.2-beta…

    https://docs.hpc.cam.ac.uk/cloud/background/04-sla.html
    4 Jun 2019: UIS shall notify the Customer by announcing the maintenance using an official UIS news channel prior to performing any Service Maintenance which UIS predicts will cause a Severity One Error outside
  27. Login-Web Interface — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/login-web.html
    24 Jun 2024: After clicking Launch, a new session will be queued. Once the session is active your page will look like the image below:. ... You can choose Connect to Jupyter to start your session and create a New Python 3 notebook.
  28. RFS on CSD3 (RFS-NFS) — Research Storage Documentation documentation

    https://docs.hpc.cam.ac.uk/storage/rfs/accessing-rfs/rfs-nfs.html
    5 Feb 2024: Similar to the new RDS permission structure, RFS-NFS projects have two associated user groups. ... As the setup process is currently a manual one, please allow slightly longer for new projects to be made available.
  29. Ice Lake Nodes — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/icelake.html
    24 Jun 2024: These new nodes entered general service in October 2021 and were expanded in August 2023.
  30. 2. General concepts — RCC Documentation 0.2-beta documentation

    https://docs.hpc.cam.ac.uk/cloud/background/01-general_concepts.html
    4 Jun 2019: Don’t worry about reinstalling or configuring new servers. Just select an image and launch more instances. ... Your server is failling or messed up config? simply throw it away and launch a new instance froma previous snapshot with no additional cost
  31. Linux (Generic) — Research Storage Documentation documentation

    https://docs.hpc.cam.ac.uk/storage/rfs/accessing-rfs/linux.html
    5 Feb 2024: On a new Ubuntu 22.04 VM, the following packages needed to be installed to allow mounting of DFS shares. #
  32. MultiFactor Authentication (MFA) — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/mfa.html
    24 Jun 2024: This should create a new account in your app appearing as CSD3 (SSH Login). ... Both Google Authenticator or Microsoft Authenticator display a ‘’ icon for adding a new account:.
  33. 5. Orchestration Service: OpenStack Heat — RCC Documentation 0.2-beta …

    https://docs.hpc.cam.ac.uk/cloud/userguide/07-orchestration.html
    4 Jun 2019: Now, we want to code a new Heat template to deploy the service. ... Try to repeat the process creating new stacks with different parameters, e.g.
  34. LAMMPS Molecular Dynamics Simulator — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/software-packages/lammps.html
    24 Jun 2024: The code is designed to be easy to modify or extend with new functionality.
  35. Storage Terms & Conditions — Research Storage Documentation…

    https://docs.hpc.cam.ac.uk/storage/terms.html
    5 Feb 2024: UIS shall notify the Customer by announcing the maintenance using UIS news channel prior to performing any Service Maintenance which UIS predicts will cause a Severity One Error outside of standard
  36. Jupyter Notebooks — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/software-packages/jupyter.html
    24 Jun 2024: It will then appear in NEW –> KERNEL_NAME. You can delete the kernel by running:.
  37. 4. Storage services: OpenStack Cinder and Swift — RCC Documentation…

    https://docs.hpc.cam.ac.uk/cloud/userguide/06-cinder_swift.html
    4 Jun 2019: The snapshot can then be used to create a new volume through create from snapshot. ... Fig. 4.1 Project -> Compute -> Volumes tab. When creating a new volume (Fig.
  38. CSD3 Host Keys — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/hostkeys.html
    24 Jun 2024: Provided the new fingerprint matches one of the new key fingerprints listed at From 1st February 2020, press Yes. ... Provided the new fingerprints match the new key fingerprints listed at From 1st February 2020, press Update.
  39. CSD3 Planned Service Reductions October 2023 — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/planned_service_reduction.html
    24 Jun 2024: the work to install new compute hardware and cooling infrastructure in the data centre.
  40. 2. Networking service: OpenStack Neutron — RCC Documentation 0.2-beta …

    https://docs.hpc.cam.ac.uk/cloud/userguide/02-neutron.html
    4 Jun 2019: A summary of the main goals we want to accomplish:. We would like to deploy a new web service.
  41. Running Jobs on CSD3 — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/batch.html
    24 Jun 2024: usr/local/Cluster-Docs/SLURM. New user accounts also have symbolic links to template files in their home directories.
  42. WBIC-HPHI Platform End-of-Life — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/wbic.html
    24 Jun 2024: It will be necessary for users to apply for new accounts on the CSD3 cluster, which can be done via this form. ... This command will migrate everything under your home (/) into a new folder inside your CSD3 home directory (/wbic).
  43. AlphaFold — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/software-packages/alphafold.html
    24 Jun 2024: This is a completely new model that was entered in CASP14 and published in Nature. ... input. directory. The dataset has been recently updated (November 2023) so scripts may not work without pointing to new versions of the files.
  44. Quick Start — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/quickstart.html
    24 Jun 2024: a new job or within an existing job scancel -> delete a job mybalance -> show current balance of core hour credits.
  45. File and I/O Management — CSD3 1.0 documentation

    https://docs.hpc.cam.ac.uk/hpc/user-guide/io_management.html
    24 Jun 2024: Exceeding the soft limit is allowed for 7 days, but if the over-quota condition is not corrected after 7 days, creation of new files and directories on the filesystem will ... up-to-date with any backward-compatibility implications of each new release.

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