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PowerPoint Presentation
https://www.ccdc.cam.ac.uk/media/Ice.pdf17 Jan 2023: •. •. Chemical name. Insert the common name here. Draw the molecule! Write or draw where you can find this molecule in your home. -
PowerPoint Presentation
https://www.ccdc.cam.ac.uk/media/jemsaw.pdf17 Jan 2023: •. •. Chemical name. Insert the common name here. Draw the molecule! Write or draw where you can find this molecule in your home. -
https://www.ccdc.cam.ac.uk/media/bound-backx8-letter.pdf
https://www.ccdc.cam.ac.uk/media/bound-backx8-letter.pdf17 Jan 2023: -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Introduction-to-IsoStar.pdf13 Jun 2023: PDB? 12. Go back to the IsoStar website and download the phenyl group information. ... Exercises • Download the IsoStar CSD data for the interaction of a charged pyridine ring. -
3D pri nte d m od els of chem ...
https://www.ccdc.cam.ac.uk/media/point-goup-key.pdf17 Jan 2023: 3D. pri. nte. d m. od. els. of. chem. ical. mo. lecu. les. rep. rese. nti. ng. dif. fere. nt. po. int. gro. up. s o. f sy. mm. etry. KEY. : M. atch. th. e m. od. els. wit. h c. orr. ect. po. int. gro. up. s. htt. ps:. //w. ww. sh. apew. ays. com. -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/CSDC-Deposition.pdf6 Jun 2023: and-resources/downloads/ 10. A CCDC account is required for downloading the example files. ... 4. Click Retrieve Deposited Files; this will allow you to download a zip file. -
Experimenting with Chocolate In this activity we will look ...
https://www.ccdc.cam.ac.uk/media/Experimenting_with_Chocolate.pdf17 Jan 2023: You can download and print the activity worksheet or follow along on a device. -
CHM2320_Sp16_MercuryIntroduction.pages
https://www.ccdc.cam.ac.uk/media/Metal-Organic-Intro.pdf17 Jan 2023: CHM2320 - Inorganic Chemistry Dr. Anthony L. Fernandez. Spring 2016. Introduction to Mercury. The Cambridge Crystallographic Data Centre (CCDC) distributes Mercury, which is a program that can be used to view and analyze crystal structure data. We -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/CSDC-AccessStructures.pdf9 Jun 2023: PubChem. 11. Conclusion. 12. Example 4. Downloading. 13. Download options from initial results page. ... 8. You now have a CIF file containing both structures saved to your specified downloads location. -
Reciprocal lattice worksheet
https://www.ccdc.cam.ac.uk/media/resources/mzl0.doc17 Jan 2023: Lab Final handout – Crystal Growth. Crystallography and Diffraction. Prof. Zdilla, Spring. Methods of Crystal Growth. In this lab, we will attempt to grow X-ray diffraction quality crystals. Recrystalization methods normally use two types of -
Introduction to optical isomerism & chirality Introduction Hello! …
https://www.ccdc.cam.ac.uk/media/IntroductionToOpticalIsomerism-transcript.pdf17 Jan 2023: JEKNOC10, THALID03. You can visualise and download the structures for free from CCDC's Access Structures service:. ... Mercury. visualisation software is available to download for free https://www.ccdc.cam.ac.uk/Community/csd-. community/FreeMercury/. -
1 pdb101.rcsb.or g • ccdc.cam.a c.uk Contents Get to ...
https://www.ccdc.cam.ac.uk/media/Rules-letter.pdf17 Jan 2023: 1. pdb101.rcsb.or. g • ccdc.cam.a. c.uk. Contents. Get to Know the Cards. Page 2. Bound! Game Instructions. Page 3. Memory Games. Page 4. Protein-Drug Binding Overview. Page 5. Learn more about Proteins and Drugs. Page 6. Target Audience: Ages 12 -
IYPT Crystals BattlecardsAges 8+ For 2+ players To mark ...
https://www.ccdc.cam.ac.uk/media/elements/activities/iyptcrystals_battlecards_rules_0.pdf17 Jan 2023: The images present on the cards were realised using Mercury. A f ree version of this software is available to download f rom the CSD Community webpage. -
Exercises
https://www.ccdc.cam.ac.uk/media/resources/MZ-Exercises.docx17 Jan 2023: Exercises. Please read - If you intend to use this resource in a classroom setting, you must agree to cite Mike Zdilla, Temple University. Answers to the exercises are available upon request. Contents Exercises 1 1a. Unit Cells 1 1b. Unit Cells 2 -
1 A short guide to Crystallographic Information Files A ...
https://www.ccdc.cam.ac.uk/media/MoreInformationAboutCIFsyntax.pdf28 Mar 2023: 1. A short guide to Crystallographic Information Files A CIF or Crystallographic Information File is the standard format for storing crystallographic structural. data. CIF information has a specific structure or format that needs to be followed to -
1 X-ray Crystallography Tim Royappa Department of Chemistry…
https://www.ccdc.cam.ac.uk/media/X-ray-crystallography-exercise-teaching-subset.pdf17 Jan 2023: 1. X-ray Crystallography Tim Royappa. Department of Chemistry University of West Florida. Introduction When X-rays strike a crystal, they are diffracted by the ordered atoms in the crystal, via elastic scattering from the electrons. Measurements of -
Exercises
https://www.ccdc.cam.ac.uk/media/resources/practiceproblems_george_sheldrick.docx17 Jan 2023: Exercises. Please read - If you intend to use this resource in a classroom setting, you must agree to cite George Sheldrick, Georg-August-Universität Göttingen. Contents Exercises 1 1. Symmetry Elements 1 2. Symmetry, Point Groups 1 3. Unit cells, -
Advanced search and analysis using the CSD Python API ...
https://www.ccdc.cam.ac.uk/media/Advanced-search-with-API.pdf23 Jun 2023: https://visualstudio.microsoft.com/downloads/). PYAPI-002. 4. Activating the command line 1. For this exercise we will be writing the script in a Python file that we can then run -
PowerPoint Presentation
https://www.ccdc.cam.ac.uk/media/sucros01.pdf17 Jan 2023: β. α. •. •. Chemical name. Insert the common name here. Draw the molecule! Write or draw where you can find this molecule in your home. -
Make your own Snow! In this activity we will ...
https://www.ccdc.cam.ac.uk/media/Make_your_own_snow.pdf17 Jan 2023: A clean surface to work on. You can download and print the activity worksheet or follow along on a device. -
https://www.ccdc.cam.ac.uk/media/bound-backx8-A4.pdf
https://www.ccdc.cam.ac.uk/media/bound-backx8-A4.pdf17 Jan 2023: -
Crystals of Sugar This activity will introduce you to ...
https://www.ccdc.cam.ac.uk/media/Crystals_of_Sugar.pdf17 Jan 2023: Plate (2). Saucepan. Tall, cylindrical glasses/ jars. Clothing pegs. Stove. You can download and print the activity worksheet or follow along on a device. -
https://www.ccdc.cam.ac.uk/media/PointGroups-FlowChart.pdf
https://www.ccdc.cam.ac.uk/media/PointGroups-FlowChart.pdf17 Jan 2023: -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Documentation/1B53F2BF-DF53-4CF3-8FA4-C5F009BC6CE1/CSD-CrossMiner-tutorial3-pharmacophore-query.pdf17 Jan 2023: our Downloads page. The supplied feature database contains a subset of the CSD and PDB. ... Note that the speed of the download depends on the quality of your network. -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Subset-search-ConQuest.pdf19 Jun 2023: Table of Contents Introduction. 2. Learning Outcomes. 2. Pre-required Skills. 2. Materials. 2. Loading subsets. 3. Restricting searches to a subset. 4. Conclusions. 5. Exercises. 6. Summary. 6. Next Steps. 6. Feedback. 6. Glossary. 7. Review. -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Documentation/2F172476-D4B5-4C18-AED9-165EB29C665A/using-subsets-in-conquest.pdf17 Jan 2023: Table of Contents Introduction. 2. Objectives. 2. Pre-required skills. 2. Materials. 2. Loading subsets. 3. Restricting searches to a subset. 4. Conclusions. 5. Further Exercises. 6. Conclusions. 6. Next steps. 6. Feedback. 6. Glossary. 7. Review. -
Table of Contents Purpose of Docking…
https://www.ccdc.cam.ac.uk/media/Documentation/EE9787F1-9256-4A91-8264-95371DCD8008/GOLD-tutorial-Flexibility-Constraints.pdf17 Jan 2023: Please download the example files for this tutorial. You will balance flexibility and constraints in two separate docking experiments trying to predict the poses of:. • ... confidence about key interactions. Download Input Files examples. 6. Your -
Table of Contents Docking with Water in the Binding ...
https://www.ccdc.cam.ac.uk/media/Documentation/4DDADBC4-A645-4E44-AD37-73D09F04C298/GOLD-DockingWater-tutorial.pdf17 Jan 2023: Materials For this workshop we will use the files that you can download from here. ... If you have not already, download the files from the link provided in the Materials section on page 3. -
Table of Contents Ensemble Docking…
https://www.ccdc.cam.ac.uk/media/Documentation/0D5504D3-81F2-46D3-9D1D-16787D07F70B/GOLD-tutorial-EnsembleDocking.pdf17 Jan 2023: not treat the set in any kind of ‘averaged’ capacity. Please download the tutorial input files here. -
Introduction to the CSD Python API (PYAPI-001) 2020.3 CSD ...
https://www.ccdc.cam.ac.uk/media/Documentation/6AA69486-FA98-4182-84F9-50A586CC0B04/CSD-Python-API-workshop.pdf17 Jan 2023: Materials. For this workshop you will need the file example.cif that you can download here. ... https://visualstudio.microsoft.com/downloads/). PYAPI-001. 4. Example 1: Demonstrating Input and Output. Aim. This example will focus on understanding the -
PowerPoint Presentation
https://www.ccdc.cam.ac.uk/media/csdu-csd-python-api-101-slides.pdf17 Jan 2023: Download, use, edit, and sharescripts with the community. https://github.com/ccdc-opensource/csd-python-api-scripts. CSD Python API: Interface. • -
01July2015 Release-A4
https://www.ccdc.cam.ac.uk/media/CSD50-1July2015-press-release.pdf19 Jan 2023: Batch mode execution. The new update for CSD-System will be available to download from the CCDC website from July 6th 2015. -
Lego, Chocolate, and Polymorphs.What is a crystal?A crystal is ...
https://www.ccdc.cam.ac.uk/media/CCDC_lego_ed_sheet.pdf17 Jan 2023: catchy. Congratulations on completing the activity!You can download your collectable virtual badge. -
1 Note: the image above has the only scope ...
https://www.ccdc.cam.ac.uk/media/SymmetryOperations-and-PoinGroups_Worksheet.pdf17 Jan 2023: 1 Note: the image above has the only scope to provide an example of the operation and element of immediate visualisation, even though the result of the operation does not make the molecule appear same as before. σ. σ. σ σ σ. σ. σh. •. •. -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Documentation/75D6F5FC-8B6E-4795-BDCC-67A3300639A6/CSD-CrossMiner-tutorial-4-features-database.pdf17 Jan 2023: our Downloads page. The supplied feature database contains a subset of the CSD and PDB. ... Note that the speed of the download depends on the quality of your network. -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Introduction-to-Hermes.pdf13 Jun 2023: Materials For this workshop we will use the files that you can download from here. -
In this handout you will find guidelines for the ...
https://www.ccdc.cam.ac.uk/media/CCDC_identikit_procedure.pdf17 Jan 2023: You can download the collectable virtual badge following the instructions on our webpage. -
MOG-001 1 Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/HG-Mogul-Intro-MOG-001.pdf19 Jun 2023: Materials For this workshop we will use the file 1JR1_ligand.pdb that you can download from this link. -
Understanding molecules by exploring crystal structures Chemistry,…
https://www.ccdc.cam.ac.uk/media/Web-Structure-exploration.pdf17 Jan 2023: Understanding molecules by exploring crystal structures Chemistry, Physics Target age group: High school/A-Level/University students (16+ y.o.) Description: This learning module exposes students to the structures of molecules by allowing them to -
Introduction to the CSD Python API (PYAPI-001) 2023.1 CSD ...
https://www.ccdc.cam.ac.uk/media/Introduction-to-API.pdf23 Jun 2023: Materials. For this workshop you will need the file example.cif that you can download here. ... https://visualstudio.microsoft.com/downloads/). PYAPI-001. 4. Example 1: Demonstrating Input and Output. Aim. This example will focus on understanding the -
PowerPoint Presentation
https://www.ccdc.cam.ac.uk/media/CSD-in-numbers-poster-2019.pdf17 Jan 2023: 44 (0)1223 336408 www.ccdc.cam.ac.uk 44 (0)1223 336408 www.ccdc.cam.ac.uk. The Cambridge Structural Database (CSD) in Numbers Yu Gan, Suzanna Ward, Matthew Lightfoot, Clare Tovee, Philip AndrewsThe Database Team, The Cambridge Crystallographic Data -
Teaching Tutorial - Hydrogen bond Definition, examples, special cases …
https://www.ccdc.cam.ac.uk/media/Teaching-Tutorial-Hydrogen-Bond.pdf17 Jan 2023: Teaching Tutorial. -. Hydrogen bond Definition, examples, special cases. Course of. General and Inorganic Chemistry. Author:. Stefano Canossa. Reviewed by. Prof. Alessia Bacchi. Università degli Studi di Parma,. Dipartimento di Chimica. Teaching -
Data Access Data Deposition(Ingest) Data Publication Data Curation…
https://www.ccdc.cam.ac.uk/media/CCDC_online_Database_Workflow_v3.pdf17 Jan 2023: Data Access. Data Deposition(Ingest). Data Publication. Data Curation. Metadata and terms of deposition confirmed by the depositor. CIF, HKL and FCF data deposited via the CCDC deposition and validation service. Depositor’s responses to checks and -
1 Table of Contents Try – it’s your turn! ...
https://www.ccdc.cam.ac.uk/media/CSDU-Mogul101-Try.pdf17 Jan 2023: Materials For this workshop we will use the file 1JR1_ligand.pdb that you can download from this link. -
1 pdb101.rcsb.or g • ccdc.cam.a c.uk Contents Get to ...
https://www.ccdc.cam.ac.uk/media/Rules-A4.pdf17 Jan 2023: 1. pdb101.rcsb.or. g • ccdc.cam.a. c.uk. Contents. Get to Know the Cards. Page 2. Bound! Game Instructions. Page 3. Memory Games. Page 4. Protein-Drug Binding Overview. Page 5. Learn more about Proteins and Drugs. Page 6. Target Audience: Ages 12 -
IYPT Crystals BattlecardsAges 8+ For 2+ players To mark ...
https://www.ccdc.cam.ac.uk/media/IYPTCrystals_Battlecards_Rules_0.pdf17 Jan 2023: The images present on the cards were realised using Mercury. A f ree version of this software is available to download f rom the CSD Community webpage. -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Documentation/D9D5C8AA-0731-4012-AC68-4D2C0A324F58/protein-ligand-interactions-using-FIMs.pdf17 Jan 2023: Table of Contents Introduction. 2. Objectives. 2. Pre-required skills. 3. Example. Using Full Interaction Maps to analyse docking solutions. 3. Case Study. 3. Material. 4. Calculating FIMs in Mercury. 4. Hermes: Loading the protein-ligand complex. -
Table of Contents Pharmacophore Constraints in GOLD…
https://www.ccdc.cam.ac.uk/media/Documentation/0710126D-D4BC-438F-92F0-7D5074240033/GOLD-tutorial-PharmacophoreConstraints.pdf17 Jan 2023: Table of Contents Pharmacophore Constraints in GOLD. 2. Case Study. 3. Introduction. 3. Docking with GOLD without constraints. 5. Defining the Binding Site. 6. Selecting Ligand for Docking. 7. Analysing Docking Results. 10. Docking with -
Table of Contents Introduction…
https://www.ccdc.cam.ac.uk/media/Searching_CSD_with_WebCSD.pdf20 Dec 2023: WCSD-002. 8. 20. Click Download at the bottom of the results list to download entries as CIF files or as a GCD file, which allows you to load the CSD ... 21. Click Download Parameter Data to download the 3D information gathered. -
Table of Contents Try – it’s your turn!…
https://www.ccdc.cam.ac.uk/media/GOLD-101_handout-1.pdf17 Jan 2023: Materials For this workshop we will use the files that you can download from here. ... Provided Input Files. Please download and unzip the input files from this link.
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