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macroModel atom types
https://www-jmg.ch.cam.ac.uk/cil/SGTL/mmod_atomtypes.html6 May 2024: university of cambridge. macroModel atom types. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemi cal Information Laboratory. and this information is for historical interest only. MacroModel Atom Types. MacroModel - Atom and -
practical two: conformation searching
https://www-jmg.ch.cam.ac.uk/cil/SGTL/prac2.html6 May 2024: university of cambridge. practical two: conformation searching. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemical Information Laboratory. and this information is for historical interest only. Practical Two: Conformation -
JOIN
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/join.html6 May 2024: university of cambridge. JOIN. JOIN. JOIN a b c d e f maxdist. The. JOIN. command must be followed by six integers and one floating point number. The command takes two C-H bonds, and turns them into a C-C bond, if the carbon atoms are separated by -
9,10 dimethoxy[7]helicene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/helicene.html6 May 2024: university of cambridge. 9,10 dimethoxy[7]helicene. Notes. Literature. Efficient Phenanthrene, Helicene, and Azahelicene Syntheses. D. C. Harrowven, I. L. Guy and L. Nanson Angew. Chem. Int. Ed. 2006, 45, 2242-2245. SMILES. -
Calculation of DP4
https://www-jmg.ch.cam.ac.uk/tools/nmr/DP4/3 May 2021: the goodman group. university of cambridge. Assignment of stereochemistry and structure using NMR and DP4. DP4-AI Automated NMR Data Analysis: Straight from Spectrometer to Structure. A. Howarth, K. Ermanis and J. M. Goodman. Chemical Science 2020, -
computational chemistry journals
https://www-jmg.ch.cam.ac.uk/data/c2k/cj/comp.html6 May 2024: university of cambridge. computational chemistry journals. Computational. March 2013). Chemicke Zvesti; published under the auspices of the Slovak Academy of Sciences, the Slovak Chemical Society and the Faculty of Chemistry, Tomas Bata University, -
cyclohexa 1,3 diene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexa13diene.html6 May 2024: university of cambridge. cyclohexa 1,3 diene. SMILES. C1=CCCC=C1. Canonical SMILES. C1CC=CC=C1. InChI. InChI=1/C6H8/c1-2-4-6-5-3-1/h1-4H,5-6H2. -
cyclohexa 1,4 diene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexa14diene.html6 May 2024: university of cambridge. cyclohexa 1,4 diene. SMILES. C1C=CCC=C1. Canonical SMILES. C1C=CCC=C1. InChI. InChI=1/C6H8/c1-2-4-6-5-3-1/h1-2,5-6H,3-4H2. AuxInfo=1/0/N:2,3,1,4,6,5/E:(1,2,5,6)(3,4)/rA:6nCCCCCC/rB:s1;d2;s3;s4;s1d5;/rC:-.7145,.4125,0;-.7145,- -
List of pictures
https://www-jmg.ch.cam.ac.uk/data/molecules/pictureindex.html6 May 2024: university of cambridge. List of pictures. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
environment and agriculture
https://www-jmg.ch.cam.ac.uk/data/c2k/cj/environ.html6 May 2024: university of cambridge. environment and agriculture. Environment and Agriculture. March 2013). was Chemistry in Britain). ChemNetBase On line chemical information. formerly Proceedings of the Indian Academy of Sciences (Chemical Sciences)). June -
cyclooctene (trans)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/transcyclooctene.html6 May 2024: university of cambridge. cyclooctene (trans). SMILES. C1=CCCCCCC/1. Canonical SMILES. C1CCCC=CCC1. InChI. InChI=1/C8H14/c1-2-4-6-8-7-5-3-1/h1-2H,3-8H2/b2-1+. AuxInfo=1/0/N:1,2,3,4,5,7,6,8/E:(1,2)(3,4)(5,6)(7,8)/rA:8nCCCCCCCC/rB:d1;s1;s2;s3;s5;s4;s6s7 -
cycloctatetraene
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cycloctatetraene.html6 May 2024: university of cambridge. cycloctatetraene. SMILES. C1=C/C=CC=C/C=C1. Canonical SMILES. C1=CC=CC=CC=C1. InChI. InChI=1/C8H8/c1-2-4-6-8-7-5-3-1/h1-8H/b2-1-,3-1-,4-2-,5-3-,6-4-,7-5-,8-6-,8-7-. -
arachidonic acid
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arachidonicacid.html6 May 2024: university of cambridge. arachidonic acid. SMILES. CCCCC/C=CC/C=CC/C=CC/C=CCCCC(O)=O. Canonical SMILES. CCCCCC=CCC=CCC=CCC=CCCCC(=O)O. InChI. -
methylcyclohexane
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/methylcyclohexane.html6 May 2024: university of cambridge. methylcyclohexane. SMILES. CC1CCCCC1. Canonical SMILES. CC1CCCCC1. InChI. InChI=1/C7H14/c1-7-5-3-2-4-6-7/h7H,2-6H2,1H3. -
glabrescol
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/glabrescol.html6 May 2024: university of cambridge. glabrescol. Literature. The stereochemistry of glabrescol. B. R. Bellenie and J. M. Goodman Tetrahedron Letters 2001, 42, 7477-7479. DOI: 10.1016/S0040-4039(01)01551-9. SMILES. CC(C)(O)[C@@](O1)([H])CC[C@]1(C)[C@@](O2)([H])CC -
index of canonical SMILES
https://www-jmg.ch.cam.ac.uk/data/molecules/smilesindex.html6 May 2024: university of cambridge. index of canonical SMILES. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
CHNG
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/chng.html6 May 2024: university of cambridge. CHNG. CHNG. CHNG a b c d e. CHNG. must be followed by five integers. The first two are atom numbers. The first atom is the point of attachment of the sidechain, and will remain unchanged. The second atom will be changed into -
#sketchBINOL
https://www-jmg.ch.cam.ac.uk/publications/sketchBINOL_3D.html6 May 2024: university of cambridge. sketchBINOL. How best to sketch BINOL, and BINOL-derived catalysts, to illustrate how its shape can transfer stereogenic information to substrates? The above diagram is consistent with the view of BINOL we have used in:. 2005 -
cavicularin
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cavicularin.html6 May 2024: university of cambridge. cavicularin. Notes This molecule is chiral. The absolute configuration is not known. The three-dimensional picture, above, may show the natural product or may be its enantiomer. The InChI (version 1) naming system cannot -
engineering and technology journals
https://www-jmg.ch.cam.ac.uk/data/c2k/cj/tech.html6 May 2024: university of cambridge. engineering and technology journals. Engineering and Technology. March 2013). was Chemistry in Britain). On line chemical information. formerly Proceedings of the Indian Academy of Sciences (Chemical Sciences)). A and B). -
List of structures
https://www-jmg.ch.cam.ac.uk/data/molecules/structureindex.html6 May 2024: university of cambridge. List of structures. Goodman Group, 2005-2024; privacy; last updated May 6, 2024. -
RBx11160
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/antimalarial.html6 May 2024: university of cambridge. RBx11160. Literature. Spiro and Dispiro-1,2,4-trioxolanes as Antimalarial Peroxides: Charting a Workable Structure-Activity Relationship Using Simple Prototypes. Y. Dong, J. Chollet, H. Matile, S. A. Charman, F. C. K. Chiu, -
mailing list
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/accamail.html6 May 2024: university of cambridge. mailing list. Mailing List. If you want to receive the latest information about 'Acca' send an E-mail to jmg11@cam.ac.uk with the word 'ACCA' in the subject line. You will then be E-mailed of major updates, and of bug-reports -
platensimycin
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/platensimycin.html6 May 2024: university of cambridge. platensimycin. Literature. Platensimycin is a selective FabF inhibitor with potent antibiotic properties. J. Wang, S. M. Soisson, K. Young, W. Shoop, S. Kodali, A. Galgoci, R. Painter, G. Parthasarathy, Y. S. Tang, R. -
R metolachlor
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/metolachlor_R.html6 May 2024: university of cambridge. R metolachlor. Alternate names aS, 5R metolachlor. Notes Metolachlor is a pesticide which has a chiral centre and also shows axial chirality. The latter does no appear to have a big effect on its activity, but the S form is -
arabinose (alpha pyranose)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_pa.html6 May 2024: university of cambridge. arabinose (alpha pyranose). Alternate names arabinose. α-arabinose. SMILES. O[C@H]1[C@@H](O)[C@H](O)[C@H](O)CO1. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5-/m1/s1. -
arabinose (beta pyranose)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_pb.html6 May 2024: university of cambridge. arabinose (beta pyranose). Alternate names arabinose. β-arabinose. SMILES. O[C@@H]1[C@@H](O)[C@H](O)[C@H](O)CO1. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5+/m1/s1. -
arabinose (alpha furanose)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_fa.html6 May 2024: university of cambridge. arabinose (alpha furanose). Alternate names arabinose. α-arabinose. SMILES. O[C@H]1[C@H](O)[C@@H](CO)O[C@H]1O. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m1/s1. -
arabinose (beta furanose)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_fb.html6 May 2024: university of cambridge. arabinose (beta furanose). Alternate names arabinose. β-arabinose. SMILES. O[C@H]1[C@H](O)[C@@H](CO)O[C@@H]1O. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5+/m1/s1. -
examples
https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/examples.html6 May 2024: university of cambridge. examples. Examples. A simple FLIP command file. INFILE OUTFILE COMM This file will flip atom number 1, keeping 2 and 3 COMM unchanged and swapping 4 and 5. FLIP 1 2 3 4 5. A simple CHNG command file. INFILE OUTFILE COMM This -
abietic acid
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/abietic_acid.html6 May 2024: university of cambridge. abietic acid. SMILES. CC(C)C1=CC2=CC[C@@]3([H])[C@](C)(C(O)=O)CCC[C@]3(C)[C@@]2([H])CC1. Canonical SMILES. CC(C)C1=CC2=CCC3C(C)(CCCC3(C)C2CC1)C(=O)O. InChI. -
Chemical Informatics Letters
https://www-jmg.ch.cam.ac.uk/CIL/cil_v7n5.html21 Apr 2013: Submission of data is open, but peer reviewed and the database contains over 5000 spectra - and fewer compounds - submitted by fewer than 20 people. ... Wiki, the Hawaiian word for quick, is a way of running a web site which can be interactively updated -
cyclohexane (twist boat)
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexanetwistboat.html6 May 2024: university of cambridge. cyclohexane (twist boat). SMILES. C1CCCCC1. Canonical SMILES. C1CCCCC1. InChI. InChI=1/C6H12/c1-2-4-6-5-3-1/h1-6H2. -
materials journals
https://www-jmg.ch.cam.ac.uk/data/c2k/cj/material.html6 May 2024: university of cambridge. materials journals. Materials. March 2013). Chemicke Zvesti; published under the auspices of the Slovak Academy of Sciences, the Slovak Chemical Society and the Faculty of Chemistry, Tomas Bata University, Zlin). formerly -
DNA - AT base pair
https://www-jmg.ch.cam.ac.uk/data/molecules/misc/dna_atpair.html6 May 2024: university of cambridge. DNA - AT base pair. Alternate names An adenine-thymine base pair from DNA, each with a deoxyribose attached. Notes More information on DNA structure is available. A Structure for Deoxyribose Nucleic Acid. J. D. Watson and F. -
Genetic Code
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/code.html6 May 2024: university of cambridge. Genetic Code. Genetic Code. AAA Lys ACA Thr AGA Arg ATA Ile AAC Asn ACC Thr AGC Ser ATC Ile AAG Lys ACG Thr AGG Arg ATG Met/start AAT Asn ACT Thr AGT Ser ATT Ile CAA Gln CCA Pro CGA Arg CTA Leu CAC His CCC Pro CGC Arg CTC -
inorganic chemistry journals
https://www-jmg.ch.cam.ac.uk/data/c2k/cj/inorganic.html6 May 2024: university of cambridge. inorganic chemistry journals. Inorganic. March 2013). Chemicke Zvesti; published under the auspices of the Slovak Academy of Sciences, the Slovak Chemical Society and the Faculty of Chemistry, Tomas Bata University, Zlin). -
ISIS/base introduction
https://www-jmg.ch.cam.ac.uk/cil/SGTL/MDL/ISISbase.html6 May 2024: university of cambridge. ISIS/base introduction. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemical Information Laboratory. and this information is for historical interest only. ISIS/Base Introduction. ISIS/Base is an -
Chemical Informatics Letters
https://www-jmg.ch.cam.ac.uk/CIL/cil_v3n6.html21 Apr 2013: Forty people resigned from the editorial board of the Machine Learning Journal, and joined the editorial board of the Journal of Machine Learning Research, which is free, and does not demand -
Alanine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/ala.html6 May 2024: university of cambridge. Alanine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman Group, -
Arginine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/arg.html6 May 2024: university of cambridge. Argnine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman Group, -
Asparagine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/asn.html6 May 2024: university of cambridge. Asparagine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman -
Aspartic Acid
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/asp.html6 May 2024: university of cambridge. Aspartic Acid. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman -
Cysteine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/cys.html6 May 2024: university of cambridge. Cysteine. Cysteine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. -
Glutamine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/gln.html6 May 2024: university of cambridge. Glutamine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman -
Glutamic Acid
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/glu.html6 May 2024: university of cambridge. Glutamic Acid. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman -
Glycine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/gly.html6 May 2024: university of cambridge. Glycine. Gly. G. Glycine is achiral. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse -
Histidine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/his.html6 May 2024: university of cambridge. Histidine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman -
Isoleucine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/ile.html6 May 2024: university of cambridge. Isoleucine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman -
Leucine
https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/leu.html6 May 2024: university of cambridge. Leucine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman Group,
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