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  2. macroModel atom types

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/mmod_atomtypes.html
    6 May 2024: university of cambridge. macroModel atom types. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemi cal Information Laboratory. and this information is for historical interest only. MacroModel Atom Types. MacroModel - Atom and
  3. practical two: conformation searching

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/prac2.html
    6 May 2024: university of cambridge. practical two: conformation searching. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemical Information Laboratory. and this information is for historical interest only. Practical Two: Conformation
  4. JOIN

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/join.html
    6 May 2024: university of cambridge. JOIN. JOIN. JOIN a b c d e f maxdist. The. JOIN. command must be followed by six integers and one floating point number. The command takes two C-H bonds, and turns them into a C-C bond, if the carbon atoms are separated by
  5. 9,10 dimethoxy[7]helicene

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/helicene.html
    6 May 2024: university of cambridge. 9,10 dimethoxy[7]helicene. Notes. Literature. Efficient Phenanthrene, Helicene, and Azahelicene Syntheses. D. C. Harrowven, I. L. Guy and L. Nanson Angew. Chem. Int. Ed. 2006, 45, 2242-2245. SMILES.
  6. Calculation of DP4

    https://www-jmg.ch.cam.ac.uk/tools/nmr/DP4/
    3 May 2021: the goodman group. university of cambridge. Assignment of stereochemistry and structure using NMR and DP4. DP4-AI Automated NMR Data Analysis: Straight from Spectrometer to Structure. A. Howarth, K. Ermanis and J. M. Goodman. Chemical Science 2020,
  7. computational chemistry journals

    https://www-jmg.ch.cam.ac.uk/data/c2k/cj/comp.html
    6 May 2024: university of cambridge. computational chemistry journals. Computational. March 2013). Chemicke Zvesti; published under the auspices of the Slovak Academy of Sciences, the Slovak Chemical Society and the Faculty of Chemistry, Tomas Bata University,
  8. cyclohexa 1,3 diene

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexa13diene.html
    6 May 2024: university of cambridge. cyclohexa 1,3 diene. SMILES. C1=CCCC=C1. Canonical SMILES. C1CC=CC=C1. InChI. InChI=1/C6H8/c1-2-4-6-5-3-1/h1-4H,5-6H2.
  9. cyclohexa 1,4 diene

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexa14diene.html
    6 May 2024: university of cambridge. cyclohexa 1,4 diene. SMILES. C1C=CCC=C1. Canonical SMILES. C1C=CCC=C1. InChI. InChI=1/C6H8/c1-2-4-6-5-3-1/h1-2,5-6H,3-4H2. AuxInfo=1/0/N:2,3,1,4,6,5/E:(1,2,5,6)(3,4)/rA:6nCCCCCC/rB:s1;d2;s3;s4;s1d5;/rC:-.7145,.4125,0;-.7145,-
  10. List of pictures

    https://www-jmg.ch.cam.ac.uk/data/molecules/pictureindex.html
    6 May 2024: university of cambridge. List of pictures. Goodman Group, 2005-2024; privacy; last updated May 6, 2024.
  11. environment and agriculture

    https://www-jmg.ch.cam.ac.uk/data/c2k/cj/environ.html
    6 May 2024: university of cambridge. environment and agriculture. Environment and Agriculture. March 2013). was Chemistry in Britain). ChemNetBase On line chemical information. formerly Proceedings of the Indian Academy of Sciences (Chemical Sciences)). June
  12. cyclooctene (trans)

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/transcyclooctene.html
    6 May 2024: university of cambridge. cyclooctene (trans). SMILES. C1=CCCCCCC/1. Canonical SMILES. C1CCCC=CCC1. InChI. InChI=1/C8H14/c1-2-4-6-8-7-5-3-1/h1-2H,3-8H2/b2-1+. AuxInfo=1/0/N:1,2,3,4,5,7,6,8/E:(1,2)(3,4)(5,6)(7,8)/rA:8nCCCCCCCC/rB:d1;s1;s2;s3;s5;s4;s6s7
  13. cycloctatetraene

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cycloctatetraene.html
    6 May 2024: university of cambridge. cycloctatetraene. SMILES. C1=C/C=CC=C/C=C1. Canonical SMILES. C1=CC=CC=CC=C1. InChI. InChI=1/C8H8/c1-2-4-6-8-7-5-3-1/h1-8H/b2-1-,3-1-,4-2-,5-3-,6-4-,7-5-,8-6-,8-7-.
  14. arachidonic acid

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arachidonicacid.html
    6 May 2024: university of cambridge. arachidonic acid. SMILES. CCCCC/C=CC/C=CC/C=CC/C=CCCCC(O)=O. Canonical SMILES. CCCCCC=CCC=CCC=CCC=CCCCC(=O)O. InChI.
  15. methylcyclohexane

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/methylcyclohexane.html
    6 May 2024: university of cambridge. methylcyclohexane. SMILES. CC1CCCCC1. Canonical SMILES. CC1CCCCC1. InChI. InChI=1/C7H14/c1-7-5-3-2-4-6-7/h7H,2-6H2,1H3.
  16. glabrescol

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/glabrescol.html
    6 May 2024: university of cambridge. glabrescol. Literature. The stereochemistry of glabrescol. B. R. Bellenie and J. M. Goodman Tetrahedron Letters 2001, 42, 7477-7479. DOI: 10.1016/S0040-4039(01)01551-9. SMILES. CC(C)(O)[C@@](O1)([H])CC[C@]1(C)[C@@](O2)([H])CC
  17. index of canonical SMILES

    https://www-jmg.ch.cam.ac.uk/data/molecules/smilesindex.html
    6 May 2024: university of cambridge. index of canonical SMILES. Goodman Group, 2005-2024; privacy; last updated May 6, 2024.
  18. CHNG

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/chng.html
    6 May 2024: university of cambridge. CHNG. CHNG. CHNG a b c d e. CHNG. must be followed by five integers. The first two are atom numbers. The first atom is the point of attachment of the sidechain, and will remain unchanged. The second atom will be changed into
  19. #sketchBINOL

    https://www-jmg.ch.cam.ac.uk/publications/sketchBINOL_3D.html
    6 May 2024: university of cambridge. sketchBINOL. How best to sketch BINOL, and BINOL-derived catalysts, to illustrate how its shape can transfer stereogenic information to substrates? The above diagram is consistent with the view of BINOL we have used in:. 2005
  20. cavicularin

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cavicularin.html
    6 May 2024: university of cambridge. cavicularin. Notes This molecule is chiral. The absolute configuration is not known. The three-dimensional picture, above, may show the natural product or may be its enantiomer. The InChI (version 1) naming system cannot
  21. engineering and technology journals

    https://www-jmg.ch.cam.ac.uk/data/c2k/cj/tech.html
    6 May 2024: university of cambridge. engineering and technology journals. Engineering and Technology. March 2013). was Chemistry in Britain). On line chemical information. formerly Proceedings of the Indian Academy of Sciences (Chemical Sciences)). A and B).
  22. List of structures

    https://www-jmg.ch.cam.ac.uk/data/molecules/structureindex.html
    6 May 2024: university of cambridge. List of structures. Goodman Group, 2005-2024; privacy; last updated May 6, 2024.
  23. RBx11160

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/antimalarial.html
    6 May 2024: university of cambridge. RBx11160. Literature. Spiro and Dispiro-1,2,4-trioxolanes as Antimalarial Peroxides: Charting a Workable Structure-Activity Relationship Using Simple Prototypes. Y. Dong, J. Chollet, H. Matile, S. A. Charman, F. C. K. Chiu,
  24. mailing list

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/accamail.html
    6 May 2024: university of cambridge. mailing list. Mailing List. If you want to receive the latest information about 'Acca' send an E-mail to jmg11@cam.ac.uk with the word 'ACCA' in the subject line. You will then be E-mailed of major updates, and of bug-reports
  25. platensimycin

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/platensimycin.html
    6 May 2024: university of cambridge. platensimycin. Literature. Platensimycin is a selective FabF inhibitor with potent antibiotic properties. J. Wang, S. M. Soisson, K. Young, W. Shoop, S. Kodali, A. Galgoci, R. Painter, G. Parthasarathy, Y. S. Tang, R.
  26. R metolachlor

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/metolachlor_R.html
    6 May 2024: university of cambridge. R metolachlor. Alternate names aS, 5R metolachlor. Notes Metolachlor is a pesticide which has a chiral centre and also shows axial chirality. The latter does no appear to have a big effect on its activity, but the S form is
  27. arabinose (alpha pyranose)

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_pa.html
    6 May 2024: university of cambridge. arabinose (alpha pyranose). Alternate names arabinose. α-arabinose. SMILES. O[C@H]1[C@@H](O)[C@H](O)[C@H](O)CO1. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5-/m1/s1.
  28. arabinose (beta pyranose)

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_pb.html
    6 May 2024: university of cambridge. arabinose (beta pyranose). Alternate names arabinose. β-arabinose. SMILES. O[C@@H]1[C@@H](O)[C@H](O)[C@H](O)CO1. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5+/m1/s1.
  29. arabinose (alpha furanose)

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_fa.html
    6 May 2024: university of cambridge. arabinose (alpha furanose). Alternate names arabinose. α-arabinose. SMILES. O[C@H]1[C@H](O)[C@@H](CO)O[C@H]1O. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m1/s1.
  30. arabinose (beta furanose)

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/arabinose_fb.html
    6 May 2024: university of cambridge. arabinose (beta furanose). Alternate names arabinose. β-arabinose. SMILES. O[C@H]1[C@H](O)[C@@H](CO)O[C@@H]1O. Canonical SMILES. InChI. InChI=1/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5+/m1/s1.
  31. examples

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/accadoc/examples.html
    6 May 2024: university of cambridge. examples. Examples. A simple FLIP command file. INFILE OUTFILE COMM This file will flip atom number 1, keeping 2 and 3 COMM unchanged and swapping 4 and 5. FLIP 1 2 3 4 5. A simple CHNG command file. INFILE OUTFILE COMM This
  32. abietic acid

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/abietic_acid.html
    6 May 2024: university of cambridge. abietic acid. SMILES. CC(C)C1=CC2=CC[C@@]3([H])[C@](C)(C(O)=O)CCC[C@]3(C)[C@@]2([H])CC1. Canonical SMILES. CC(C)C1=CC2=CCC3C(C)(CCCC3(C)C2CC1)C(=O)O. InChI.
  33. Chemical Informatics Letters

    https://www-jmg.ch.cam.ac.uk/CIL/cil_v7n5.html
    21 Apr 2013: Submission of data is open, but peer reviewed and the database contains over 5000 spectra - and fewer compounds - submitted by fewer than 20 people. ... Wiki, the Hawaiian word for quick, is a way of running a web site which can be interactively updated
  34. cyclohexane (twist boat)

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/cyclohexanetwistboat.html
    6 May 2024: university of cambridge. cyclohexane (twist boat). SMILES. C1CCCCC1. Canonical SMILES. C1CCCCC1. InChI. InChI=1/C6H12/c1-2-4-6-5-3-1/h1-6H2.
  35. materials journals

    https://www-jmg.ch.cam.ac.uk/data/c2k/cj/material.html
    6 May 2024: university of cambridge. materials journals. Materials. March 2013). Chemicke Zvesti; published under the auspices of the Slovak Academy of Sciences, the Slovak Chemical Society and the Faculty of Chemistry, Tomas Bata University, Zlin). formerly
  36. DNA - AT base pair

    https://www-jmg.ch.cam.ac.uk/data/molecules/misc/dna_atpair.html
    6 May 2024: university of cambridge. DNA - AT base pair. Alternate names An adenine-thymine base pair from DNA, each with a deoxyribose attached. Notes More information on DNA structure is available. A Structure for Deoxyribose Nucleic Acid. J. D. Watson and F.
  37. Genetic Code

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/code.html
    6 May 2024: university of cambridge. Genetic Code. Genetic Code. AAA Lys ACA Thr AGA Arg ATA Ile AAC Asn ACC Thr AGC Ser ATC Ile AAG Lys ACG Thr AGG Arg ATG Met/start AAT Asn ACT Thr AGT Ser ATT Ile CAA Gln CCA Pro CGA Arg CTA Leu CAC His CCC Pro CGC Arg CTC
  38. inorganic chemistry journals

    https://www-jmg.ch.cam.ac.uk/data/c2k/cj/inorganic.html
    6 May 2024: university of cambridge. inorganic chemistry journals. Inorganic. March 2013). Chemicke Zvesti; published under the auspices of the Slovak Academy of Sciences, the Slovak Chemical Society and the Faculty of Chemistry, Tomas Bata University, Zlin).
  39. ISIS/base introduction

    https://www-jmg.ch.cam.ac.uk/cil/SGTL/MDL/ISISbase.html
    6 May 2024: university of cambridge. ISIS/base introduction. The Silicon Graphics Teaching Laboratory. has been replaced by the. Chemical Information Laboratory. and this information is for historical interest only. ISIS/Base Introduction. ISIS/Base is an
  40. Chemical Informatics Letters

    https://www-jmg.ch.cam.ac.uk/CIL/cil_v3n6.html
    21 Apr 2013: Forty people resigned from the editorial board of the Machine Learning Journal, and joined the editorial board of the Journal of Machine Learning Research, which is free, and does not demand
  41. Alanine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/ala.html
    6 May 2024: university of cambridge. Alanine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman Group,
  42. Arginine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/arg.html
    6 May 2024: university of cambridge. Argnine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman Group,
  43. Asparagine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/asn.html
    6 May 2024: university of cambridge. Asparagine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman
  44. Aspartic Acid

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/asp.html
    6 May 2024: university of cambridge. Aspartic Acid. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman
  45. Cysteine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/cys.html
    6 May 2024: university of cambridge. Cysteine. Cysteine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them.
  46. Glutamine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/gln.html
    6 May 2024: university of cambridge. Glutamine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman
  47. Glutamic Acid

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/glu.html
    6 May 2024: university of cambridge. Glutamic Acid. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman
  48. Glycine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/gly.html
    6 May 2024: university of cambridge. Glycine. Gly. G. Glycine is achiral. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse
  49. Histidine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/his.html
    6 May 2024: university of cambridge. Histidine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman
  50. Isoleucine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/ile.html
    6 May 2024: university of cambridge. Isoleucine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman
  51. Leucine

    https://www-jmg.ch.cam.ac.uk/tools/magnus/molecules/amino/leu.html
    6 May 2024: university of cambridge. Leucine. Sorry - your browser cannot display Java. Use the mouse to rotate the molecules. Hold down the 'shift' key and move the mouse to move them. Hold down the 'control' key and move the mouse to scale them. Goodman Group,

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