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  2. Genomic scale sub-family assignment ofprotein domainsJulian Gough*…

    https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/articles/nar2006-famlevclass.pdf
    28 Jul 2006: To carry out this test the method requires pairwise scoresfrom HMMs, which usually give a many-against-one (profile)score. ... Figure 1. The E-value calibration curve of the hybrid method using the sigmoidal distribution on the benchmark test.
  3. gkl910 308..313

    https://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY/articles/nar2007.pdf
    21 Dec 2006: From a statistical viewpoint, we test the hypo-thesis that assuming a query domain is in superfamily A,the query domain is in family A1. ... To test the hypothesis, we calculate the pairwise scorebetween the query domain and the best profile
  4. Genomic scale sub-family assignment ofprotein domainsJulian Gough*…

    https://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/gough_nar_family_2006.pdf
    28 Jul 2006: To carry out this test the method requires pairwise scoresfrom HMMs, which usually give a many-against-one (profile)score. ... Figure 1. The E-value calibration curve of the hybrid method using the sigmoidal distribution on the benchmark test.
  5. gkl910 1..6

    https://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/wilson_nar_2007.pdf
    10 Nov 2006: From a statistical viewpoint, we test the hypo-thesis that assuming a query domain is in superfamily A,. ... To test the hypothesis, we calculate the pairwise scorebetween the query domain and the best profile scoringsequence from family A1.
  6. plge-02-04-03 529..536

    https://supfam.mrc-lmb.cam.ac.uk/bioinformatics/people/julian_gough/publications/liu_plos_2006.pdf
    21 Apr 2006: The dataset(coding plus non-coding) was randomly divided into ten equal-sizedsubsets. During each test, a SVM was trained on nine subsets andtested on the tenth one. ... This procedure was repeated ten times sothat each subset was used as the test set

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