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Dr Irina Mohorianu | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/users/dr-irina-mohorianu23 Feb 2024: Search site. Core Bioinformatics group. Dr Irina Mohorianu. Real name:. Name:. Dr Irina Mohorianu. History. Member for. 3 years 9 months. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. -
Miguel Larraz | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/miguel-larraz23 Feb 2024: My MSc research project was focused on building a pipeline for Targeted NGS reads in a gene panel for Colorectal cancer; these were summarised in features for the data-driven prediction ... During this initial research, I got interested in understanding -
Pipelines & Tools | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools23 Feb 2024: Search site. Core Bioinformatics group. Pipelines & Tools. Core Bioinformatics group. Pipelines & Tools. Pipelines in use. mRNA-Seq. mRNA-Seq alternative splicing. ChIP-Seq. scRNA-Seq. bisulfite-Seq. Nextflow. Tools we are developing. The truth is -
g78067.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/g78067png23 Feb 2024: Search site. Core Bioinformatics group. g78067.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah Biomedical -
Welcome Toby! | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/news/welcome-toby23 Feb 2024: Search site. Core Bioinformatics group. Welcome Toby! Submitted by Dr Irina Mohorianu on Mon, 03/05/2021 - 06:29. We welcome a new member of the group - Toby Milne Clark! The truth is rarely pure and never simple. Oscar Wilde, The Importance of -
Liviu Pirvan | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/liviu-pirvan23 Feb 2024: Search site. Core Bioinformatics group. Liviu Pirvan. PhD Medical Science. MRes Machine Learning. BEng Computer Science. I completed my BEng in Computer Science at the University of York, my MRes in Machine Learning at Imperial College London, and -
Nextflow | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines/nextflow23 Feb 2024: Search site. Core Bioinformatics group. Nextflow. enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Nextflow is becoming a powerful -
Contact us | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/contact-us23 Feb 2024: Search site. Core Bioinformatics group. Contact us. Core Bioinformatics group. Contact us. We are based here:. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah Biomedical Centre. Puddicombe Way. Cambridge, CB2 0AW. Irina Mohorianu, Head -
chipseq.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/chipseqpng23 Feb 2024: Search site. Core Bioinformatics group. chipseq.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
We are hiring! | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/news/we-are-hiring23 Feb 2024: Lauzikaite on Thu, 04/02/2021 - 16:02. A Research Assistant/Associate - Bioinformatician position has opened in our lab! -
Andi Munteanu | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/andi-munteanu23 Feb 2024: This MSc balances taught modules and research; for the latter, over the last year, I focused on the topic of clustering stability on biological data (single cell high throughput expression data). -
Image processing | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/tools/image-processing23 Feb 2024: Search site. Core Bioinformatics group. Image processing. We are developing an imaging processing pipeline which would help us achieve the 3D localization of the fluorescent molecules analysed with the DHPSF microscope. The video is first stacked -
Join us | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/join-us23 Feb 2024: Research Assistants, prospective PhD students and Research Associates are welcome. The truth is rarely pure and never simple. -
workflow.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/workflowpng23 Feb 2024: Search site. Core Bioinformatics group. workflow.png. Alt Text:. Workflow diagram of the noisyR pipeline. Title Text:. Workflow diagram of the noisyR pipeline. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. -
Cristian Bulgaru | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/cristian-bulgaru23 Feb 2024: Search site. Core Bioinformatics group. Cristian Bulgaru. MSc Artificial Intelligence and Optimization (2022-). Data Science Starter Program (2022-2023). Currently enrolled in the Artificial Intelligence and Optimization MSc program at University A. -
ClustAssess is on biorxiv! | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/news/clustassess-biorxiv23 Feb 2024: Search site. Core Bioinformatics group. ClustAssess is on biorxiv! Submitted by Dr Irina Mohorianu on Fri, 04/02/2022 - 06:24. A new preprint (describing ClustAssess) is on bioarxiv:. “ClustAssess: tools for assessing the robustness of single-cell -
Cell classification | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/tools/cell-classification23 Feb 2024: Search site. Core Bioinformatics group. Cell classification. The semi-supervised cell classification project is based on a sequencing input. The task is the classification of the cells according to external labels (in this context the labels are -
Photos | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/photos23 Feb 2024: Search site. Core Bioinformatics group. Photos. Core Bioinformatics group. Photos. Christmas 2023 at King's College. Christmas at King's College December 2023; bottom row: Friedrich, Rafael, top row: Cameron, Irina, Miguel, Eleanor. Christmas at King -
bisulfite.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/bisulfitepng23 Feb 2024: Search site. Core Bioinformatics group. bisulfite.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
Alex Calderwood | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/alex-calderwood23 Feb 2024: Before working at the CSCI I was a post-doc at the John Innes Centre, Norwich Research Park, UK, where I worked on comparative transcriptomics over plant development. -
bulkAnalyseR is on biorxiv! | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/news/bulkanalyser-biorxiv23 Feb 2024: Search site. Core Bioinformatics group. bulkAnalyseR is on biorxiv! Submitted by Dr Irina Mohorianu on Fri, 04/02/2022 - 06:20. A new preprint (describing bulkAnalyseR) is on bioarxiv:. “bulkAnalyseR: An accessible, interactive pipeline for -
Index sort data | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines/index-sort-data23 Feb 2024: Search site. Core Bioinformatics group. Index sort data. For the optimisation of FACS-sorted cell cultures, we have generated a pipeline identifying discriminative genes from index sort data. The pipeline uses the depth distribution of features in -
imohorianu.jpg | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/imohorianujpg23 Feb 2024: Search site. Core Bioinformatics group. imohorianu.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
Group members | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/group-members23 Feb 2024: Research Assistant (2022 - ). MPhil Student in Health Data Science (2022- ); Primary supervisor: Irina Mohorianu. ... Chenge (Joanna) Du (December 2022 - July 2023) Research Assistant, Cambridge Cancer Institute, CRUK. -
Cameron Crawford | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/cameron-crawford23 Feb 2024: Search site. Core Bioinformatics group. Cameron Crawford. I started my Bachelor's degree in Computer Science at the University of Cambridge in 2021 and joined the Core Bioinformatics group as an intern at the end of my first year. Throughout my -
noisyR is now published in NAR | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/news/noisyr-now-published-nar23 Feb 2024: Search site. Core Bioinformatics group. noisyR is now published in NAR. Submitted by Dr Irina Mohorianu on Sun, 04/07/2021 - 15:35. Illias' paper was acceped in NAR! Well done, Ilias! noisyR: Enhancing biological signal in sequencing datasets by -
Data denoising with noisyR | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/tools/data-denoising-noisyr23 Feb 2024: Search site. Core Bioinformatics group. Data denoising with noisyR. The NoisyR manuscript was accepted to Nucleic Acids Research (June 2021)! -
dorinmiron.jpg | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/dorinmironjpg23 Feb 2024: Search site. Core Bioinformatics group. dorinmiron.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
Data | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/data23 Feb 2024: Search site. Core Bioinformatics group. Data. Core Bioinformatics group. Data. Data acquisition, traceability and curation. We operate a strict policy of experimental record-keeping with traceable identifiers for each experiment that are linked to -
Arash Shahsavari | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/arash-shahsavari23 Feb 2024: Search site. Core Bioinformatics group. Arash Shahsavari. MSc Complex Adaptive Systems (2019). In 2019 I finished my master’s studies at Chalmers University of Technology, in Gothenburg, Sweden, with a thesis on single-cell RNA-seq clustering and -
We welcome Alex and Andi! | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/news/we-welcome-alex-and-andi23 Feb 2024: Search site. Core Bioinformatics group. We welcome Alex and Andi! Submitted by Dr Irina Mohorianu on Sun, 04/07/2021 - 15:37. We welcome Alex Calderwood (post-doc) and Andi Munteanu (intern) to the group. We're looking forward to some interesting -
KendigSham.jpg | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/kendigshamjpg23 Feb 2024: Search site. Core Bioinformatics group. KendigSham.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
ChIP-Seq | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines/chip-seq23 Feb 2024: Search site. Core Bioinformatics group. ChIP-Seq. Chromatin immunoprecipitation sequencing (ChIP-Seq) is used to analyse DNA-protein interactions. It infers the positions in a reference genome that are bound by the protein of interest. The list of -
Rafael Kollyfas | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/rafael-kollyfas23 Feb 2024: My primary research interest lies in the application of machine learning in healthcare, particularly in omics. -
Teaching material | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/teaching-material23 Feb 2024: Search site. Core Bioinformatics group. Teaching material. Core Bioinformatics group. Teaching. All teaching materials from the Core Bioinformatics group can be found on our GitHub page. CSCI Teaching. Introduction to RNAseq. This repository -
feamiR_ega.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/feamiregapng23 Feb 2024: Search site. Core Bioinformatics group. feamiR_ega.png. Alt Text:. Summary of features selected by eGA on full H. sapiens positive and negative sets. Title Text:. Summary of features selected by eGA on full H. sapiens positive and negative sets. The -
The Noise paper is presented at UKCBCB, NRP by Ilias | Core…
https://www.corebioinf.stemcells.cam.ac.uk/news/noise-paper-presented-ukcbcb-nrp-ilias23 Feb 2024: Institute, Norwich Research Park, UK. -
William (Billy) Dunn | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/william-billy-dunn23 Feb 2024: Search site. Core Bioinformatics group. William (Billy) Dunn. BSc (MedSci) (2013). MBChB (Hons) (2015). MSc Bioinformatics (2017). MRCP (2020). PhD in Stem Cell Biology (2022-present). I completed my intercalated BSc, medical degree and MSc at the -
Bisulfite sequencing | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines/bisulfite-sequencing23 Feb 2024: Search site. Core Bioinformatics group. Bisulfite sequencing. Bisulfite sequencing (BS) is a technique used to analyse patterns of DNA methylation. As DNA polymerase used in polymerase chain reaction (PCR) during a standard NGS protocol does not -
Publications | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/publications23 Feb 2024: Search site. Core Bioinformatics group. Publications. Core Bioinformatics group. Publications. Methods papers. 2022. ClustAssess: tools for assessing the robustness of single-cell clustering. Arash Shahsavari, Andi Munteanu, Irina Mohorianu. doi:. -
WilliamDunn.jpg | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/williamdunnjpg23 Feb 2024: Search site. Core Bioinformatics group. WilliamDunn.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
Kendig (Kenny) Sham | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/kendig-kenny-sham23 Feb 2024: My aim is to expand my Machine Learning skills and apply classic and novel approaches on RNA-seq datasets (at bulk and single-cell level) while working as a Research Assistant -
The Split manuscript is presented at UKCBCB, NRP by Eleanor | Core…
https://www.corebioinf.stemcells.cam.ac.uk/news/split-manuscript-presented-ukcbcb-nrp-eleanor23 Feb 2024: Institute, Norwich Research Park, UK. -
Bulk mRNA-Seq | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines/bulk-mrna-seq23 Feb 2024: To increase the visibility of CSCI research in the wider community, we create shiny apps for each bulk mRNA-Seq dataset which can be used to explore data and share more -
LiviuPirvan.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/liviupirvanpng23 Feb 2024: Search site. Core Bioinformatics group. LiviuPirvan.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah -
Toby Milne-Clark | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/toby-milne-clark23 Feb 2024: disciplines. Consequently, I studied for an MSc in Statistics and Data Science with the Université Grenoble Alpes during which I worked in multiple Research Assistant roles for various laboratories at the ... I am keen on applying machine learning -
Clustering evaluation with ClustAssess | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/tools/clustering-evaluation-clustassess23 Feb 2024: Search site. Core Bioinformatics group. Clustering evaluation with ClustAssess. The transition from bulk to single-cell analyses transformed the computational challenges for high-throughput sequencing data processing. At the core of single-cell -
feamiR_ffs.png | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/file/feamirffspng23 Feb 2024: Search site. Core Bioinformatics group. feamiR_ffs.png. Alt Text:. Improvement in performance when adding features, ordered on the x-axis, selected by FFS on a subset of the full H. sapiens dataset. Title Text:. Improvement in performance when -
feamiR - R package for predicting miRNA/mRNA interactions | Core…
https://www.corebioinf.stemcells.cam.ac.uk/news/feamir-r-package-predicting-mirnamrna-interactions23 Feb 2024: Search site. Core Bioinformatics group. feamiR - R package for predicting miRNA/mRNA interactions. Submitted by E. Lauzikaite on Tue, 12/01/2021 - 12:28. Our methods paper on feamiR, an R tool for charaterising and predicting miRNA/mRNA interactions -
Ilias Moutsopoulos | Core Bioinformatics group
https://www.corebioinf.stemcells.cam.ac.uk/staff/ilias-moutsopoulos23 Feb 2024: I am currently working with dr. Irina Mohorianu as a research assistant at the Cambridge Stem Cell Institute, developing pipelines for the analysis of diverse types of data. ... Nucleic Acids Research. Contact Details. im383 at cam.ac.uk. Available for
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