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  2. feamiRworkflow.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirworkflowpng
    23 Feb 2024: Search site. Core Bioinformatics group. feamiRworkflow.png. Alt Text:. Overview of the feamiR workflow. Title Text:. Overview of the feamiR workflow. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest.
  3. nclusters-pac-text.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/nclusters-pac-textpng-0
    10 Jul 2024: Search site. Core Bioinformatics group. nclusters-pac-text.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  4. Dr Irina Mohorianu | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/users/dr-irina-mohorianu
    23 Feb 2024: Search site. Core Bioinformatics group. Dr Irina Mohorianu. Real name:. Name:. Dr Irina Mohorianu. History. Member for. 3 years 9 months. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest.
  5. We are hiring! | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/we-are-hiring
    23 Feb 2024: Lauzikaite on Thu, 04/02/2021 - 16:02. A Research Assistant/Associate - Bioinformatician position has opened in our lab!
  6. bletchleypark_september2023_2.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkseptember20232jpg
    10 Jul 2024: Search site. Core Bioinformatics group. bletchleypark_september2023_2.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  7. bletchleypark_september2023_1.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkseptember20231jpg
    10 Jul 2024: Search site. Core Bioinformatics group. bletchleypark_september2023_1.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  8. feamiR_rf_gini.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirrfginipng
    23 Feb 2024: Search site. Core Bioinformatics group. feamiR_rf_gini.png. Alt Text:. Boxplot showing distribution of mean decrease in Gini index of features across 100 runs on different subsamples of the full H. sapiens dataset. Title Text:. Boxplot showing
  9. Group members | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/group-members
    10 Jul 2024: Research Assistant (2022 - ). MPhil Student in Health Data Science (2022- ); Primary supervisor: Irina Mohorianu. ... Chenge (Joanna) Du (December 2022 - July 2023) Research Assistant, Cambridge Cancer Institute, CRUK.
  10. Photos | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/photos
    23 Feb 2024: Search site. Core Bioinformatics group. Photos. Core Bioinformatics group. Photos. Christmas 2023 at King's College. Christmas at King's College December 2023; bottom row: Friedrich, Rafael, top row: Cameron, Irina, Miguel, Eleanor. Christmas at King
  11. BletchleyFeb2023_1.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyfeb20231png
    23 Feb 2024: Search site. Core Bioinformatics group. BletchleyFeb2023_1.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  12. bulk_rnaseq_jaccard.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bulkrnaseqjaccardpng
    23 Feb 2024: Search site. Core Bioinformatics group. bulk_rnaseq_jaccard.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  13. bulk_rnaseq_volcano.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bulkrnaseqvolcanopng
    23 Feb 2024: Search site. Core Bioinformatics group. bulk_rnaseq_volcano.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  14. Arash Shahsavari | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/arash-shahsavari
    10 Jul 2024: Search site. Core Bioinformatics group. Arash Shahsavari. MSc Complex Adaptive Systems (2019). In 2019 I finished my master’s studies at Chalmers University of Technology, in Gothenburg, Sweden, with a thesis on single-cell RNA-seq clustering and
  15. BletchleyPark_AlanTuringStatue.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkalanturingstatuejpg
    10 Jul 2024: Search site. Core Bioinformatics group. BletchleyPark_AlanTuringStatue.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  16. BletchleyPark_House.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkhousejpg
    23 Feb 2024: Search site. Core Bioinformatics group. BletchleyPark_House.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  17. William (Billy) Dunn | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/william-billy-dunn
    10 Jul 2024: Search site. Core Bioinformatics group. William (Billy) Dunn. BSc (MedSci) (2013). MBChB (Hons) (2015). MSc Bioinformatics (2017). MRCP (2020). PhD in Stem Cell Biology (2022-present). I completed my intercalated BSc, medical degree and MSc at the
  18. noisyr_plot_pcc.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/noisyrplotpccpng
    23 Feb 2024: Search site. Core Bioinformatics group. noisyr_plot_pcc.png. Alt Text:. Indicative plots of the Pearson correlation calculated on windows of increasing average abundance for the count matrix-based noise removal approach (left) and per exon for the
  19. feamiR_statistical_heatmap.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirstatisticalheatmappng
    10 Jul 2024: Search site. Core Bioinformatics group. feamiR_statistical_heatmap.png. Alt Text:. Heatmaps illustrating chi-squared and Fisher exact p-values when assessing differences in positional proportions of single nucleotides (left) and dinucleotides (right)
  20. feamiR_dtree_voting.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirdtreevotingpng
    23 Feb 2024: Search site. Core Bioinformatics group. feamiR_dtree_voting.png. Alt Text:. Boxplot showing distribution, on DTs, over 100 subsamples of the full H. sapiens dataset. Title Text:. Boxplot showing distribution, on DTs, over 100 subsamples of the full H
  21. Kendig (Kenny) Sham | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/kendig-kenny-sham
    10 Jul 2024: My aim is to expand my Machine Learning skills and apply classic and novel approaches on RNA-seq datasets (at bulk and single-cell level) while working as a Research Assistant
  22. FlorisJohanMariaRoos.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/florisjohanmariaroosjpg
    23 Feb 2024: Search site. Core Bioinformatics group. FlorisJohanMariaRoos.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  23. alternative-splicing.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/alternative-splicingjpg
    23 Feb 2024: Search site. Core Bioinformatics group. alternative-splicing.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  24. Dorin Miron | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/dorin-miron
    23 Feb 2024: Search site. Core Bioinformatics group. Dorin Miron. MSc and BSc Computer Science. I graduated BSc and MSc in Computer Science from Cuza University in Iasi, Romania. Starting with a deep interest in programming and software engineering, I further
  25. Rafael Kollyfas | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/rafael-kollyfas
    10 Jul 2024: My primary research interest lies in the application of machine learning in healthcare, particularly in omics.
  26. Miguel Larraz | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/miguel-larraz
    23 Feb 2024: My MSc research project was focused on building a pipeline for Targeted NGS reads in a gene panel for Colorectal cancer; these were summarised in features for the data-driven prediction ... During this initial research, I got interested in understanding
  27. image_processing_panels.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/imageprocessingpanelspng
    23 Feb 2024: Search site. Core Bioinformatics group. image_processing_panels.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  28. Toby Milne-Clark | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/toby-milne-clark
    10 Jul 2024: disciplines. Consequently, I studied for an MSc in Statistics and Data Science with the Université Grenoble Alpes during which I worked in multiple Research Assistant roles for various laboratories at the ... I am keen on applying machine learning
  29. BletchleyFebruary2023_3.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyfebruary20233jpg
    23 Feb 2024: Search site. Core Bioinformatics group. BletchleyFebruary2023_3.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  30. BletchleyFebruary2023_2.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyfebruary20232jpg
    23 Feb 2024: Search site. Core Bioinformatics group. BletchleyFebruary2023_2.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  31. noisyR is now published in NAR | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/noisyr-now-published-nar
    10 Jul 2024: Search site. Core Bioinformatics group. noisyR is now published in NAR. Submitted by Dr Irina Mohorianu on Sun, 04/07/2021 - 15:35. Illias' paper was acceped in NAR! Well done, Ilias! noisyR: Enhancing biological signal in sequencing datasets by
  32. feamiR_kernel_hyperparameter.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirkernelhyperparameterpng
    10 Jul 2024: Search site. Core Bioinformatics group. feamiR_kernel_hyperparameter.png. Alt Text:. Performance of SVM model with a variety of kernels on seed features using 10-fold cross-validation on a set of H. sapiens miRNA/mRNA interactions validated by
  33. Cristian Bulgaru | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/cristian-bulgaru
    23 Feb 2024: Search site. Core Bioinformatics group. Cristian Bulgaru. MSc Artificial Intelligence and Optimization (2022-). Data Science Starter Program (2022-2023). Currently enrolled in the Artificial Intelligence and Optimization MSc program at University A.
  34. We welcome Alex and Andi! | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/we-welcome-alex-and-andi
    10 Jul 2024: Search site. Core Bioinformatics group. We welcome Alex and Andi! Submitted by Dr Irina Mohorianu on Sun, 04/07/2021 - 15:37. We welcome Alex Calderwood (post-doc) and Andi Munteanu (intern) to the group. We're looking forward to some interesting
  35. ClustAssess is on biorxiv! | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/clustassess-biorxiv
    23 Feb 2024: Search site. Core Bioinformatics group. ClustAssess is on biorxiv! Submitted by Dr Irina Mohorianu on Fri, 04/02/2022 - 06:24. A new preprint (describing ClustAssess) is on bioarxiv:. “ClustAssess: tools for assessing the robustness of single-cell
  36. Liviu Pirvan | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/liviu-pirvan
    23 Feb 2024: Search site. Core Bioinformatics group. Liviu Pirvan. PhD Medical Science. MRes Machine Learning. BEng Computer Science. I completed my BEng in Computer Science at the University of York, my MRes in Machine Learning at Imperial College London, and
  37. Cameron Crawford | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/cameron-crawford
    23 Feb 2024: Search site. Core Bioinformatics group. Cameron Crawford. I started my Bachelor's degree in Computer Science at the University of Cambridge in 2021 and joined the Core Bioinformatics group as an intern at the end of my first year. Throughout my
  38. cameroncrawford_photo.jpeg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/cameroncrawfordphotojpeg-0
    23 Feb 2024: Search site. Core Bioinformatics group. cameroncrawford_photo.jpeg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  39. Ilias Moutsopoulos | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/ilias-moutsopoulos
    10 Jul 2024: I am currently working with dr. Irina Mohorianu as a research assistant at the Cambridge Stem Cell Institute, developing pipelines for the analysis of diverse types of data. ... Nucleic Acids Research. Contact Details. im383 at cam.ac.uk. Available for
  40. Andi Munteanu | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/andi-munteanu
    23 Feb 2024: This MSc balances taught modules and research; for the latter, over the last year, I focused on the topic of clustering stability on biological data (single cell high throughput expression data).
  41. Alex Calderwood | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/alex-calderwood
    23 Feb 2024: Before working at the CSCI I was a post-doc at the John Innes Centre, Norwich Research Park, UK, where I worked on comparative transcriptomics over plant development.
  42. feamiR_feature_heatmap.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirfeatureheatmappng
    23 Feb 2024: Search site. Core Bioinformatics group. feamiR_feature_heatmap.png. Alt Text:. Heatmap showing the discriminative power of features across the 5 feature-selection methods on the full H. sapiens positive set. Title Text:. Heatmap showing the
  43. bulkAnalyseR is on biorxiv! | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/bulkanalyser-biorxiv
    23 Feb 2024: Search site. Core Bioinformatics group. bulkAnalyseR is on biorxiv! Submitted by Dr Irina Mohorianu on Fri, 04/02/2022 - 06:20. A new preprint (describing bulkAnalyseR) is on bioarxiv:. “bulkAnalyseR: An accessible, interactive pipeline for
  44. feamiR_numtrees_hyperparameter.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirnumtreeshyperparameterpng
    10 Jul 2024: Search site. Core Bioinformatics group. feamiR_numtrees_hyperparameter.png. Alt Text:. Performance of RF model with a range of number of trees, from 1 to 100, using 10-fold cross-validation on a set of H. sapiens miRNA/mRNA interactions validated by
  45. BletchleyPark_BombeMachine.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkbombemachinejpg
    23 Feb 2024: Search site. Core Bioinformatics group. BletchleyPark_BombeMachine.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  46. Nextflow | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines/nextflow
    10 Jul 2024: Search site. Core Bioinformatics group. Nextflow. enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Nextflow is becoming a powerful
  47. nclusters-pac-text.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/nclusters-pac-textpng-0
    23 Feb 2024: Search site. Core Bioinformatics group. nclusters-pac-text.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  48. Group members | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/group-members
    23 Feb 2024: Research Assistant (2022 - ). MPhil Student in Health Data Science (2022- ); Primary supervisor: Irina Mohorianu. ... Chenge (Joanna) Du (December 2022 - July 2023) Research Assistant, Cambridge Cancer Institute, CRUK.
  49. bletchleypark_september2023_2.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkseptember20232jpg
    23 Feb 2024: Search site. Core Bioinformatics group. bletchleypark_september2023_2.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  50. bletchleypark_september2023_1.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkseptember20231jpg
    23 Feb 2024: Search site. Core Bioinformatics group. bletchleypark_september2023_1.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  51. Arash Shahsavari | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/arash-shahsavari
    23 Feb 2024: Search site. Core Bioinformatics group. Arash Shahsavari. MSc Complex Adaptive Systems (2019). In 2019 I finished my master’s studies at Chalmers University of Technology, in Gothenburg, Sweden, with a thesis on single-cell RNA-seq clustering and

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