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  2. Andi Munteanu | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/andi-munteanu
    27 Jul 2024: This MSc balances taught modules and research; for the latter, over the last year, I focused on the topic of clustering stability on biological data (single cell high throughput expression data).
  3. bulk_rnaseq_jaccard.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bulkrnaseqjaccardpng
    27 Jul 2024: Search site. Core Bioinformatics group. bulk_rnaseq_jaccard.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  4. bulk_rnaseq_volcano.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bulkrnaseqvolcanopng
    27 Jul 2024: Search site. Core Bioinformatics group. bulk_rnaseq_volcano.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  5. Cristian Bulgaru | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/cristian-bulgaru
    27 Jul 2024: Search site. Core Bioinformatics group. Cristian Bulgaru. MSc Artificial Intelligence and Optimization (2022-). Data Science Starter Program (2022-2023). Currently enrolled in the Artificial Intelligence and Optimization MSc program at University A.
  6. BletchleyPark_House.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkhousejpg
    27 Jul 2024: Search site. Core Bioinformatics group. BletchleyPark_House.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  7. Alex Calderwood | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/alex-calderwood
    27 Jul 2024: Before working at the CSCI I was a post-doc at the John Innes Centre, Norwich Research Park, UK, where I worked on comparative transcriptomics over plant development.
  8. Cameron Crawford | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/cameron-crawford
    27 Jul 2024: Search site. Core Bioinformatics group. Cameron Crawford. I started my Bachelor's degree in Computer Science at the University of Cambridge in 2021 and joined the Core Bioinformatics group as an intern at the end of my first year. Throughout my
  9. feamiR_dtree_voting.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirdtreevotingpng
    27 Jul 2024: Search site. Core Bioinformatics group. feamiR_dtree_voting.png. Alt Text:. Boxplot showing distribution, on DTs, over 100 subsamples of the full H. sapiens dataset. Title Text:. Boxplot showing distribution, on DTs, over 100 subsamples of the full H
  10. Data | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/data
    27 Jul 2024: Search site. Core Bioinformatics group. Data. Core Bioinformatics group. Data. Data acquisition, traceability and curation. We operate a strict policy of experimental record-keeping with traceable identifiers for each experiment that are linked to
  11. ClustAssess is on biorxiv! | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/clustassess-biorxiv
    27 Jul 2024: Search site. Core Bioinformatics group. ClustAssess is on biorxiv! Submitted by Dr Irina Mohorianu on Fri, 04/02/2022 - 06:24. A new preprint (describing ClustAssess) is on bioarxiv:. “ClustAssess: tools for assessing the robustness of single-cell
  12. Pipelines & Tools | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools
    23 Feb 2024: Search site. Core Bioinformatics group. Pipelines & Tools. Core Bioinformatics group. Pipelines & Tools. Pipelines in use. mRNA-Seq. mRNA-Seq alternative splicing. ChIP-Seq. scRNA-Seq. bisulfite-Seq. Nextflow. Tools we are developing. The truth is
  13. FlorisJohanMariaRoos.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/florisjohanmariaroosjpg
    27 Jul 2024: Search site. Core Bioinformatics group. FlorisJohanMariaRoos.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  14. alternative-splicing.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/alternative-splicingjpg
    27 Jul 2024: Search site. Core Bioinformatics group. alternative-splicing.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  15. bulkAnalyseR is on biorxiv! | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/bulkanalyser-biorxiv
    27 Jul 2024: Search site. Core Bioinformatics group. bulkAnalyseR is on biorxiv! Submitted by Dr Irina Mohorianu on Fri, 04/02/2022 - 06:20. A new preprint (describing bulkAnalyseR) is on bioarxiv:. “bulkAnalyseR: An accessible, interactive pipeline for
  16. Arash Shahsavari | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/arash-shahsavari
    27 Jul 2024: Search site. Core Bioinformatics group. Arash Shahsavari. MSc Complex Adaptive Systems (2019). In 2019 I finished my master’s studies at Chalmers University of Technology, in Gothenburg, Sweden, with a thesis on single-cell RNA-seq clustering and
  17. image_processing_panels.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/imageprocessingpanelspng
    27 Jul 2024: Search site. Core Bioinformatics group. image_processing_panels.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  18. Tools | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/tools
    23 Feb 2024: Search site. Core Bioinformatics group. Tools. Tools. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah
  19. feamiR_feature_heatmap.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirfeatureheatmappng
    27 Jul 2024: Search site. Core Bioinformatics group. feamiR_feature_heatmap.png. Alt Text:. Heatmap showing the discriminative power of features across the 5 feature-selection methods on the full H. sapiens positive set. Title Text:. Heatmap showing the
  20. BletchleyFebruary2023_3.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyfebruary20233jpg
    27 Jul 2024: Search site. Core Bioinformatics group. BletchleyFebruary2023_3.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  21. BletchleyFebruary2023_2.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyfebruary20232jpg
    27 Jul 2024: Search site. Core Bioinformatics group. BletchleyFebruary2023_2.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  22. cameroncrawford_photo.jpeg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/cameroncrawfordphotojpeg-0
    27 Jul 2024: Search site. Core Bioinformatics group. cameroncrawford_photo.jpeg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  23. Irina Mohorianu | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/irina-mohorianu
    27 Jul 2024: Nucleic Acids Research. bulkAnalyseR: An accessible, interactive pipeline for analysing and sharing bulk multi-modal sequencing data.
  24. i2.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/i2png
    23 Feb 2024: Search site. Core Bioinformatics group. i2.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah Biomedical
  25. i1.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/i1png
    23 Feb 2024: Search site. Core Bioinformatics group. i1.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah Biomedical
  26. William (Billy) Dunn | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/william-billy-dunn
    27 Jul 2024: Search site. Core Bioinformatics group. William (Billy) Dunn. BSc (MedSci) (2013). MBChB (Hons) (2015). MSc Bioinformatics (2017). MRCP (2020). PhD in Stem Cell Biology (2022-present). I completed my intercalated BSc, medical degree and MSc at the
  27. Teaching material | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/teaching-material
    27 Jul 2024: Search site. Core Bioinformatics group. Teaching material. Core Bioinformatics group. Teaching. All teaching materials from the Core Bioinformatics group can be found on our GitHub page. CSCI Teaching. Introduction to RNAseq. This repository
  28. Kendig (Kenny) Sham | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/kendig-kenny-sham
    27 Jul 2024: My aim is to expand my Machine Learning skills and apply classic and novel approaches on RNA-seq datasets (at bulk and single-cell level) while working as a Research Assistant
  29. Toby Milne-Clark | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/toby-milne-clark
    27 Jul 2024: disciplines. Consequently, I studied for an MSc in Statistics and Data Science with the Université Grenoble Alpes during which I worked in multiple Research Assistant roles for various laboratories at the ... I am keen on applying machine learning
  30. Ilias Moutsopoulos | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/ilias-moutsopoulos
    27 Jul 2024: I am currently working with dr. Irina Mohorianu as a research assistant at the Cambridge Stem Cell Institute, developing pipelines for the analysis of diverse types of data. ... Nucleic Acids Research. Contact Details. im383 at cam.ac.uk. Available for
  31. Pipelines | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/pipelines-tools/pipelines
    23 Feb 2024: Search site. Core Bioinformatics group. Pipelines. Pipelines. mRNA-Seq. mRNA-Seq alternative splicing. ChIP-Seq. scRNA-Seq. bisulfite-Seq. Nextflow. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest.
  32. Contact us | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/contact-us
    23 Feb 2024: Search site. Core Bioinformatics group. Contact us. Core Bioinformatics group. Contact us. We are based here:. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah Biomedical Centre. Puddicombe Way. Cambridge, CB2 0AW. Irina Mohorianu, Head
  33. BletchleyPark_BombeMachine.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkbombemachinejpg
    27 Jul 2024: Search site. Core Bioinformatics group. BletchleyPark_BombeMachine.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  34. Join us | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/join-us
    23 Feb 2024: Research Assistants, prospective PhD students and Research Associates are welcome. The truth is rarely pure and never simple.
  35. noisyR | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/noisyr
    23 Feb 2024: Search site. Core Bioinformatics group. noisyR. Submitted by Dr Irina Mohorianu on Mon, 18/01/2021 - 07:56. NoisyR is now submitted to biorXiv. noisyR: Enhancing biological signal in sequencing datasets by characterising random technical noise. the
  36. nclusters-pac-text.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/nclusters-pac-textpng-0
    27 Jul 2024: Search site. Core Bioinformatics group. nclusters-pac-text.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey
  37. feamiR_statistical_heatmap.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirstatisticalheatmappng
    27 Jul 2024: Search site. Core Bioinformatics group. feamiR_statistical_heatmap.png. Alt Text:. Heatmaps illustrating chi-squared and Fisher exact p-values when assessing differences in positional proportions of single nucleotides (left) and dinucleotides (right)
  38. bletchleypark_september2023_2.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkseptember20232jpg
    27 Jul 2024: Search site. Core Bioinformatics group. bletchleypark_september2023_2.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  39. bletchleypark_september2023_1.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkseptember20231jpg
    27 Jul 2024: Search site. Core Bioinformatics group. bletchleypark_september2023_1.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  40. Eleanor Williams | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/staff/eleanor-williams
    27 Jul 2024: Presented as a poster at RECOMB 2022 (Conference on Research in Computational Molecular Biology) at University of California San Diego, USA. ... Nucleic Acids Research. feamiR: Feature selection based on Genetic Algorithms for predicting miRNA-mRNA
  41. g78067.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/g78067png
    23 Feb 2024: Search site. Core Bioinformatics group. g78067.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah Biomedical
  42. chipseq.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/chipseqpng
    23 Feb 2024: Search site. Core Bioinformatics group. chipseq.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah
  43. Photos | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/photos
    23 Feb 2024: Search site. Core Bioinformatics group. Photos. Core Bioinformatics group. Photos. Christmas 2023 at King's College. Christmas at King's College December 2023; bottom row: Friedrich, Rafael, top row: Cameron, Irina, Miguel, Eleanor. Christmas at King
  44. BletchleyPark_AlanTuringStatue.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bletchleyparkalanturingstatuejpg
    27 Jul 2024: Search site. Core Bioinformatics group. BletchleyPark_AlanTuringStatue.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute.
  45. feamiR_kernel_hyperparameter.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirkernelhyperparameterpng
    27 Jul 2024: Search site. Core Bioinformatics group. feamiR_kernel_hyperparameter.png. Alt Text:. Performance of SVM model with a variety of kernels on seed features using 10-fold cross-validation on a set of H. sapiens miRNA/mRNA interactions validated by
  46. noisyR is now published in NAR | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/noisyr-now-published-nar
    27 Jul 2024: Search site. Core Bioinformatics group. noisyR is now published in NAR. Submitted by Dr Irina Mohorianu on Sun, 04/07/2021 - 15:35. Illias' paper was acceped in NAR! Well done, Ilias! noisyR: Enhancing biological signal in sequencing datasets by
  47. workflow.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/workflowpng
    23 Feb 2024: Search site. Core Bioinformatics group. workflow.png. Alt Text:. Workflow diagram of the noisyR pipeline. Title Text:. Workflow diagram of the noisyR pipeline. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest.
  48. bisulfite.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/bisulfitepng
    23 Feb 2024: Search site. Core Bioinformatics group. bisulfite.png. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah
  49. ClustAssess | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/news/clustassess
    23 Feb 2024: Search site. Core Bioinformatics group. ClustAssess. Submitted by Dr Irina Mohorianu on Sat, 10/04/2021 - 08:41. A new R package, ClustAssess, developed in the group is available on CRAN. with further info on our github:. Well done, Arash! The truth
  50. feamiR_numtrees_hyperparameter.png | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/feamirnumtreeshyperparameterpng
    27 Jul 2024: Search site. Core Bioinformatics group. feamiR_numtrees_hyperparameter.png. Alt Text:. Performance of RF model with a range of number of trees, from 1 to 100, using 10-fold cross-validation on a set of H. sapiens miRNA/mRNA interactions validated by
  51. imohorianu.jpg | Core Bioinformatics group

    https://www.corebioinf.stemcells.cam.ac.uk/file/imohorianujpg
    23 Feb 2024: Search site. Core Bioinformatics group. imohorianu.jpg. The truth is rarely pure and never simple. Oscar Wilde, The Importance of Being Earnest. core-bioinformatics-website-1000.png. Wellcome - MRC Cambridge Stem Cell Institute. Jeffrey Cheah

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