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  2. pm286 | petermr's blog | Page 81

    https://blogs.ch.cam.ac.uk/pmr/author/pm286/page/81/
    17 Jan 2022: Scraped/typed into Arcturus Continued incremental progress… I know it’s the summer vacation but we need your help even more. ... Now is your chance to Download documents robotically Run semantifiers over them Do natural language processing Extract
  3. https://blogs.ch.cam.ac.uk/pmr/2007/07/13/heather-shows-that-open-data…

    https://blogs.ch.cam.ac.uk/pmr/2007/07/13/heather-shows-that-open-data-increases-citations/feed/index.xml
    17 Jan 2022: I know you haven t been cited yet, but perhaps PLoS lets you know how many people download your paper.… [.] p[…] Heather shows that Open Data increases CitationsSo well done Heather, ... I know you haven t been cited yet, but perhaps PLoS lets you
  4. petermr's blog | A Scientist and the Web | Page 21

    https://blogs.ch.cam.ac.uk/pmr/page/21/
    17 Jan 2022: And now you can download Tabula and run it on your own computer, like you would with OpenRefine. ... 1. Download the version of Tabula for your operating system:. Windows:.
  5. petermr's blog | A Scientist and the Web | Page 41

    https://blogs.ch.cam.ac.uk/pmr/page/41/
    17 Jan 2022: I wish to download and analyze all of them. ELS: Through your affiliation with Cambridge University you are able to text mine all our content, not only the open access articles. ... If you would like to conclude our earlier discussion about a bulk data
  6. Uncategorized | petermr's blog | Page 81

    https://blogs.ch.cam.ac.uk/pmr/category/uncategorized/page/81/
    17 Jan 2022: Scraped/typed into Arcturus Continued incremental progress… I know it’s the summer vacation but we need your help even more. ... Now is your chance to Download documents robotically Run semantifiers over them Do natural language processing Extract
  7. petermr's blog | A Scientist and the Web | Page 66

    https://blogs.ch.cam.ac.uk/pmr/page/66/
    17 Jan 2022: Why? Others can check your work. Others can more easily evaluate your ideas and methodology. ... Create a directory on your system and download OSCAR4 (Bitbucket even tells you how:.
  8. https://blogs.ch.cam.ac.uk/pmr/category/publishing/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/publishing/feed/index.xml
    17 Jan 2022: Wants Your Papers/a, emScience Magazine/em, January 18, 2008 (accessible only to subscribers). ... and want to read the file, download the zip file, unzip it, point your browser at it, swear at me when the browser breaks.br / [UPDATE: Bill says is breaks.
  9. CrystalEye and Chemspider | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/06/22/crystaleye-and-chemspider/
    17 Jan 2022: I look forward to your comments. PMR: You have made this point several times. ... download. I would hope that having your work more highly exposed would be good for you and you would have more bragging rights in your thesis in regards to your
  10. https://blogs.ch.cam.ac.uk/pmr/2008/06/21/update-and-emphasis-on-publi…

    https://blogs.ch.cam.ac.uk/pmr/2008/06/21/update-and-emphasis-on-publishing-and-crystallography/feed/index.xml
    17 Jan 2022: I understand your preference is to simply blog about them so I will monitor your site for the comments instead. ... download. I would hope that having your work more highly exposed would be good for you and you would have more bragging rights in your
  11. petermr's blog | A Scientist and the Web | Page 131

    https://blogs.ch.cam.ac.uk/pmr/page/131/
    17 Jan 2022: Additional points: Some correspondents suggest the only NIH/PMC barrier is robots.txt – a guide to how and when robots can download. ... You may not download material from it (except to expose it to your own eyeballs), and certainly not redistribute it.
  12. petermr's blog | A Scientist and the Web | Page 81

    https://blogs.ch.cam.ac.uk/pmr/page/81/
    17 Jan 2022: It takes about 30-60 minutes to download, unzip and analyse a week’s material. ... even more. Now is your chance to. Download documents robotically. Run semantifiers over them.
  13. petermr's blog | A Scientist and the Web | Page 42

    https://blogs.ch.cam.ac.uk/pmr/page/42/
    17 Jan 2022: I wish to download and analyze all of them. Thanks in advance for your answers. ... I will interpret “epistemology” in a pragmatic way. If this doesn’t answer your Q please come back.
  14. The British Library’s Secure Electronic Delivery | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2010/05/09/the-british-librarys-secure-electronic-delivery/
    17 Jan 2022: Just click on the link while connected to the Internet to download the document. ... The link works best if you are using Microsoft Outlook as your e-mail client.
  15. https://blogs.ch.cam.ac.uk/pmr/2016/05/06/sci-hub-and-legal-aspects-of…

    https://blogs.ch.cam.ac.uk/pmr/2016/05/06/sci-hub-and-legal-aspects-of-contentmining/feed/index.xml
    17 Jan 2022: Looking at your problem in more detail, one can see that all kinds of evil stems from the assumption that "to mine, you have to download". ... Free your mind! Separate mining from downloading and you will find solutions!br / To mine, you need a paradigm.
  16. https://blogs.ch.cam.ac.uk/pmr/category/etd2007/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/etd2007/feed/index.xml
    17 Jan 2022: Here are some constraints in chemistry – your mileage may vary:/p ul lithere must be support for the development of Open ontologies and protocols. ... I asked “can my robots download and mine the content in your current open access repository of
  17. petermr's blog | A Scientist and the Web | Page 87

    https://blogs.ch.cam.ac.uk/pmr/page/87/
    17 Jan 2022: There are many in the OGC () who share your concerns about climate data. ... Thermo Fisher authorizes you to view, print and download the materials at this Web site (“Site”) only for your personal, non-commercial use, provided that you retain all
  18. petermr's blog | A Scientist and the Web | Page 7

    https://blogs.ch.cam.ac.uk/pmr/page/7/
    17 Jan 2022: get the link. I have no idea what happens but I assume it says “do you want to download and install ReadCube and give it permission to read your filestore”. ... It appears that you have to install it on your machine and also grant it privileges.
  19. petermr's blog | A Scientist and the Web | Page 189

    https://blogs.ch.cam.ac.uk/pmr/page/189/
    17 Jan 2022: It sits in your (Firefox) browser and reads every HTML page you load. ... In contrast Pubchem is open – anyone – like us can download the whole data.
  20. petermr's blog | A Scientist and the Web | Page 199

    https://blogs.ch.cam.ac.uk/pmr/page/199/
    17 Jan 2022: It would be nice if you could automatically import your starred articles into Endnote and perhaps to automatically download the pdf files. ... Use your colleagues’ brains as a collective organism. I do this a lot.
  21. petermr's blog | A Scientist and the Web | Page 99

    https://blogs.ch.cam.ac.uk/pmr/page/99/
    17 Jan 2022: The PDF required me to download a closed-source proprietary plugin from Adobe. ... academia? So for example, I asked one speaker who proudly talked about their thesis aggregator “how many of your theses are available under CC-BY or equivalent and can I
  22. petermr's blog | A Scientist and the Web | Page 181

    https://blogs.ch.cam.ac.uk/pmr/page/181/
    17 Jan 2022: I asked “can my robots download and mine the content in your current open access repository of theses?” – No. ... Convince students in other institutions to follow your lead and the battle is won.
  23. petermr's blog | A Scientist and the Web | Page 20

    https://blogs.ch.cam.ac.uk/pmr/page/20/
    17 Jan 2022: You find a new menuitem in your Firefox “Tools” menu, called “ePub-Catalog”. ... It also allows flexible date stamp restriction. So that should meet your needs.
  24. petermr's blog | A Scientist and the Web | Page 13

    https://blogs.ch.cam.ac.uk/pmr/page/13/
    17 Jan 2022: You may freely download and copy the material contained on this website for your personal, non-commercial use, without any right to resell or redistribute it or to compile or create ... Thank you again for your contribution. Yours sincerely,. John Alty.
  25. petermr's blog | A Scientist and the Web | Page 139

    https://blogs.ch.cam.ac.uk/pmr/page/139/
    17 Jan 2022: So, dear reader, if you are a human, and want to read the file, download the zip file, unzip it, point your browser at it, swear at me when the browser ... If – as a publisher – you want to respond I will honour your posting.
  26. petermr's blog | A Scientist and the Web | Page 44

    https://blogs.ch.cam.ac.uk/pmr/page/44/
    17 Jan 2022: Springer receives money for providing the images (This was confirmed by your colleague). ... Open Access. Diabetes Therapy is fully open access. Open access means that everyone around the world can read and download your article for free — no
  27. petermr's blog | A Scientist and the Web | Page 174

    https://blogs.ch.cam.ac.uk/pmr/page/174/
    17 Jan 2022: and …. You may print or download Content from the Site for your own personal, non-commercial use, provided that you keep intact all copyright and other proprietary notices. ... And I would obviously agree to devising a robotic protocol that was
  28. Open Access publishing at Nature | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/07/16/open-access-publishing-at-nature/
    17 Jan 2022: the most restrictive of our six main licenses, allowing redistribution. This license is often called the “free advertising” license because it allows others to download your works and share them with ... So I’d be grateful for pointers to your open
  29. petermr's blog | A Scientist and the Web | Page 47

    https://blogs.ch.cam.ac.uk/pmr/page/47/
    17 Jan 2022: your librarian colleagues in the process – for current agreements, and effects on future usage and value measures. ... Read and accept our Terms & Conditions and Download your license.
  30. petermr's blog | A Scientist and the Web | Page 175

    https://blogs.ch.cam.ac.uk/pmr/page/175/
    17 Jan 2022: the most restrictive of our six main licenses, allowing redistribution. This license is often called the “free advertising” license because it allows others to download your works and share them with ... Q6  Chairman: Does this model have an impact
  31. petermr's blog | A Scientist and the Web | Page 88

    https://blogs.ch.cam.ac.uk/pmr/page/88/
    17 Jan 2022: Adobe’s DRM requires you to download your ebook to ebook reading software called Adobe Digital Editions. ... Read it carefully and replace ${cryoEM} by your own discipline. Try “proteomics”.
  32. petermr's blog | A Scientist and the Web | Page 68

    https://blogs.ch.cam.ac.uk/pmr/page/68/
    17 Jan 2022: Downloading the software tools and creating a working directory. Open a browser and paste the following link into your address bar: A download should start automatically. ... Drag the folder to somewhere convenient, like the desktop or your documents
  33. Stevan Harnad on "open access" | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/06/12/stevan-harnad-on-open-access/
    17 Jan 2022: I asked “can my robots download and mine the content in your current open access repository of theses?” – No. ... Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely
  34. petermr's blog | A Scientist and the Web | Page 193

    https://blogs.ch.cam.ac.uk/pmr/page/193/
    17 Jan 2022: From: BioMed Central Editorial. To: Peter Murray-Rust. Subject: Download statistics for your Open Access article. ... The overall access statistics for your article are therefore likely to be significantly higher.
  35. petermr's blog | A Scientist and the Web | Page 156

    https://blogs.ch.cam.ac.uk/pmr/page/156/
    17 Jan 2022: Installation. After installing JRuby, simply download the OPSIN jarfile and copy it to your JRuby. ... PDF is similar to white bread. Pretty but horrible and bad for your semantics.
  36. petermr's blog | A Scientist and the Web | Page 48

    https://blogs.ch.cam.ac.uk/pmr/page/48/
    17 Jan 2022: It may not be YOUR personal fault, but it is your organization’s fault. ... It’s about 5% of the market, if that. So I’d like your help.
  37. petermr's blog | A Scientist and the Web | Page 177

    https://blogs.ch.cam.ac.uk/pmr/page/177/
    17 Jan 2022: I know you haven’t been cited yet, but perhaps PLoS lets you know how many people download your paper. ... SOAL would solve all the problems (assuming it read as your home page).
  38. petermr's blog | A Scientist and the Web | Page 119

    https://blogs.ch.cam.ac.uk/pmr/page/119/
    17 Jan 2022: the copyright, and it should therefore be free to both view and download“. ... download. I would hope that having your work more highly exposed would be good for you and you would have more bragging rights in your thesis in regards to your contribution
  39. https://blogs.ch.cam.ac.uk/pmr/2014/03/19/university-of-cambridges-mod…

    https://blogs.ch.cam.ac.uk/pmr/2014/03/19/university-of-cambridges-model-reply-on-restrictions-on-content-mining-publishers-refuse-50-of-requests/feed/index.xml
    17 Jan 2022: Each time we login, the maximum number of article we are allowed to download is 3 only. ... Each time we login, the maximum number of article we are allowed to download is 3 only.br / Thank you very much for your nice written-up blog post 🙂/p.
  40. How do I keep up with the Literature? | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2006/10/14/how-do-i-keep-up-with-the-literature/
    17 Jan 2022: It would be nice if you could automatically import your starred articles into Endnote and perhaps to automatically download the pdf files. ... Use your colleagues’ brains as a collective organism. I do this a lot.
  41. NO-ONE MAY DATA- OR TEXT-MINE PUBMED CENTRAL | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/04/06/no-one-may-data-or-text-mine-pubmed-central/
    17 Jan 2022: You may not download material from it (except to expose it to your own eyeballs), and certainly not redistribute it. ... Did your private correspondent say anything about license issues? I’d say that this NIH policy violates the CC-licenses used by
  42. Heather shows that Open Data increases Citations | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/07/13/heather-shows-that-open-data-increases-citations/
    17 Jan 2022: SIXTY-NINE percent increase in citations because you share your data with the rest of the world! ... I know you haven’t been cited yet, but perhaps PLoS lets you know how many people download your paper.
  43. https://blogs.ch.cam.ac.uk/pmr/2009/03/24/library-of-the-future-what-d…

    https://blogs.ch.cam.ac.uk/pmr/2009/03/24/library-of-the-future-what-do-i-say/feed/index.xml
    17 Jan 2022: What I'm trying to get at is that I think having ULibrarians as your audience is limiting. ... What I’m trying to get at is that I think having ULibrarians as your audience is limiting.
  44. OPSIN: why we need it and why we shouldn't | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/10/14/opsin-why-we-need-it-and-why-we-shouldnt/
    17 Jan 2022: Installation. After installing JRuby, simply download the OPSIN jarfile and copy it to your JRuby. ... PDF is similar to white bread. Pretty but horrible and bad for your semantics.
  45. Update and emphasis on publishing and Crystallography | petermr's …

    https://blogs.ch.cam.ac.uk/pmr/2008/06/21/update-and-emphasis-on-publishing-and-crystallography/
    17 Jan 2022: I understand your preference is to simply blog about them so I will monitor your site for the comments instead. ... download. I would hope that having your work more highly exposed would be good for you and you would have more bragging rights in your
  46. Open Data: Datument submitted to Elsevier's Serials Review |…

    https://blogs.ch.cam.ac.uk/pmr/2008/01/05/open-data-datument-submitted-to-elseviers-serials-review/
    17 Jan 2022: So, dear reader, if you are a human, and want to read the file, download the zip file, unzip it, point your browser at it, swear at me when the browser ... If you put the link back up I can re-download it and be more specific.
  47. Copyright in Scientific Theses is holding us back; Ignore it |…

    https://blogs.ch.cam.ac.uk/pmr/2009/06/12/copyright-in-scientific-theses-is-holding-us-back-ignore-it/
    17 Jan 2022: academia? So for example, I asked one speaker who proudly talked about their thesis aggregator “how many of your theses are available under CC-BY or equivalent and can I download ... I agree that if you are working in creative arts you may wish to
  48. https://blogs.ch.cam.ac.uk/pmr/2012/07/27/i-ask-elsevier-for-their-lis…

    https://blogs.ch.cam.ac.uk/pmr/2012/07/27/i-ask-elsevier-for-their-list-of-articles-published-as-hybrid-open-access/feed/index.xml
    17 Jan 2022: I wish to download and analyze all of them. Through your affiliation with Cambridge University you are able to text mine all our content, not only the open access articles. ... If you would like to conclude our earlier discussion about a bulk data
  49. #solo10 GreenChainReaction: We need more volunteers – and yes, it…

    https://blogs.ch.cam.ac.uk/pmr/2010/08/17/solo10-greenchainreaction-we-need-more-volunteers-and-yes-it-will-be-fun/
    17 Jan 2022: Scraped/typed into Arcturus. Continued incremental progress…. I know it’s the summer vacation but we need your help. ... even more. Now is your chance to. Download documents robotically. Run semantifiers over them.
  50. cyberscience: by default Elsevier's licence, copyright, etc.…

    https://blogs.ch.cam.ac.uk/pmr/2007/07/22/cyberscience-by-default-elseviers-licence-copyright-etc-cripples-us/
    17 Jan 2022: You may print or download Content from the Site for your own personal, non-commercial use, provided that you keep intact all copyright and other proprietary notices. ... 3. The following page will then be launched (turn off your pop-up blocker):.
  51. Request to Elsevier for robotic extraction of data from their…

    https://blogs.ch.cam.ac.uk/pmr/2007/07/22/request-to-elsevier-for-robotic-extraction-of-data-from-their-journals/
    17 Jan 2022: and …. You may print or download Content from the Site for your own personal, non-commercial use, provided that you keep intact all copyright and other proprietary notices. ... And I would obviously agree to devising a robotic protocol that was

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