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  2. CHM2320_Sp16_MercuryIntroduction.pages

    https://www.ccdc.cam.ac.uk/media/Metal-Organic-Intro.pdf
    17 Jan 2023: This database contains over 500 structures and can be accessed from the Database menu by choosing Database > Open the Teaching Subset. ... Once this database is open, you should see the accession codes for the crystal structures shown in the Structure
  3. 1 Note: the image above has the only scope ...

    https://www.ccdc.cam.ac.uk/media/SymmetryOperations-and-PoinGroups_Worksheet.pdf
    17 Jan 2023: 1 Note: the image above has the only scope to provide an example of the operation and element of immediate visualisation, even though the result of the operation does not make the molecule appear same as before. σ. σ. σ σ σ. σ. σh. •. •.
  4. Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/Introduction-to-IsoStar.pdf
    13 Jun 2023: from the PDB (521 entries). Open this in IsoStar as you did previously. ... IsoGen is a Linux-only program and is not covered in this tutorial.
  5. IYPT Crystals BattlecardsAges 8+ For 2+ players To mark ...

    https://www.ccdc.cam.ac.uk/media/IYPTCrystals_Battlecards_Rules_0.pdf
    17 Jan 2023: The images present on the cards were realised using Mercury. A f ree version of this software is available to download f rom the CSD Community webpage. ... This is a community led project involving volunteer contributors throughout the crystallographic
  6. Teaching Tutorial - Hydrogen bond Definition, examples, special cases …

    https://www.ccdc.cam.ac.uk/media/Teaching-Tutorial-Hydrogen-Bond.pdf
    17 Jan 2023: Following this convention, we. represent the hydrogen bond with a dotted line, as follows:. ... can call “XI”. By expanding this concept, we can think of hydrogen bond chains connecting different molecules.
  7. 1 Table of Contents Try – it’s your turn! ...

    https://www.ccdc.cam.ac.uk/media/CSDU-Mogul101-Try.pdf
    17 Jan 2023: Materials For this workshop we will use the file 1JR1_ligand.pdb that you can download from this link. ... Double-. click this line to bring up the data from the Mogul library.
  8. Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/CSDC-AccessStructures.pdf
    9 Jun 2023: More tips for using the 3D visualiser can be found on this page. ... Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge, UK. Conclusion This example shows the different download options available and how to cite data obtained via Access
  9. MOG-001 1 Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/HG-Mogul-Intro-MOG-001.pdf
    19 Jun 2023: Materials For this workshop we will use the file 1JR1_ligand.pdb that you can download from this link. ... Double-. click this line to bring up the data from the Mogul library.
  10. IYPT Crystals BattlecardsAges 8+ For 2+ players To mark ...

    https://www.ccdc.cam.ac.uk/media/elements/activities/iyptcrystals_battlecards_rules_0.pdf
    17 Jan 2023: The images present on the cards were realised using Mercury. A f ree version of this software is available to download f rom the CSD Community webpage. ... This is a community led project involving volunteer contributors throughout the crystallographic
  11. Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/CSDC-Deposition.pdf
    6 Jun 2023: Pre-required Skills. There are no pre-required skills for this workshop. Materials. ... 4. Click Retrieve Deposited Files; this will allow you to download a zip file.
  12. Table of Contents Try – it’s your turn!…

    https://www.ccdc.cam.ac.uk/media/GOLD-101_handout-1.pdf
    17 Jan 2023: Materials For this workshop we will use the files that you can download from here. ... Provided Input Files. Please download and unzip the input files from this link.
  13. 1 A short guide to Crystallographic Information Files A ...

    https://www.ccdc.cam.ac.uk/media/MoreInformationAboutCIFsyntax.pdf
    28 Mar 2023: This is usually used to store a table of values, such as atom. ... hkl files. Older versions of refinement programs (e.g., SHELXL-97) may not do this.
  14. Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/Introduction-to-Hermes.pdf
    13 Jun 2023: Materials For this workshop we will use the files that you can download from here. ... For the purposes of this example, click the white colour box as shown.
  15. Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/Searching_CSD_with_WebCSD.pdf
    20 Dec 2023: WCSD-002. 2. Introduction. This workshop will introduce you to advanced searching using WebCSD. ... 10) This time, a single result, only BUXNUD01 is returned. You may wish to.
  16. Table of Contents Protein-ligand docking with GOLD…

    https://www.ccdc.cam.ac.uk/media/Intro-Protein-Ligand-Docking-GLD-001.pdf
    17 Jan 2023: Materials For this workshop we will use the files that you can download from here. ... Provided Input Files. Please download and unzip the input files from this link.
  17. Introduction to the CSD Python API (PYAPI-001) 2023.1 CSD ...

    https://www.ccdc.cam.ac.uk/media/Introduction-to-API.pdf
    23 Jun 2023: performed analysis steps. This workshop is an introduction to the CSD Python API. ... Materials. For this workshop you will need the file example.cif that you can download here.
  18. MOG-001 1 Table of Contents Introduction…

    https://www.ccdc.cam.ac.uk/media/Documentation/86E7457F-D9A2-4DA4-99C3-37B79E9C8960/HG-Mogul.pdf
    17 Jan 2023: Materials For this workshop we will use the file 1JR1_ligand.pdb that you can download. ... from this link. Example of the Mogul geometry assessment interface. MOG-001 3.
  19. Programmatic access to the CSD using the CSD Python ...

    https://www.ccdc.cam.ac.uk/media/csdu-csd-python-api-101-try.pdf
    17 Jan 2023: Materials. For this workshop you will need the file example.cif that you can download here. ... accessing the underlying molecule from this entry. Add. these lines to your script:.
  20. Table of Contents The Purpose of…

    https://www.ccdc.cam.ac.uk/media/Documentation/F660721C-0B58-48E6-A8AE-76DD0803FC3D/GOLD-tutorial-PosePrediction.pdf
    17 Jan 2023: Please download the example folder of input files. Is this an easy docking? ... 2. Use File > Open… to load 2w5y_protein.mol2. This file includes the.
  21. Table of Contents Docking with Water in the Binding ...

    https://www.ccdc.cam.ac.uk/media/Documentation/4DDADBC4-A645-4E44-AD37-73D09F04C298/GOLD-DockingWater-tutorial.pdf
    17 Jan 2023: Materials For this workshop we will use the files that you can download from here. ... Specify this ligand by clicking Add at the bottom of the GOLD Setup window.
  22. Table of Contents Purpose of Docking…

    https://www.ccdc.cam.ac.uk/media/Documentation/EE9787F1-9256-4A91-8264-95371DCD8008/GOLD-tutorial-Flexibility-Constraints.pdf
    17 Jan 2023: Please download the example files for this tutorial. You will balance flexibility and constraints in two separate docking experiments trying to predict the poses of:. • ... To achieve this:. 1. Center on and label the Val828 in the 3D view.
  23. Introduction to the CSD Python API (PYAPI-001) 2020.3 CSD ...

    https://www.ccdc.cam.ac.uk/media/Documentation/6AA69486-FA98-4182-84F9-50A586CC0B04/CSD-Python-API-workshop.pdf
    17 Jan 2023: performed analysis steps. This workshop is an introduction to the CSD Python API. ... Materials. For this workshop you will need the file example.cif that you can download here.
  24. GOLD User Guide

    https://www.ccdc.cam.ac.uk/media/Documentation/0C5D99BC-7CC3-49B6-8319-06BEA8CA342D/GOLD_User_Guide_2020_1.pdf
    17 Jan 2023: knowledge. This document will guide you through the wealth of. options (e.g. ... question will be replaced with a dummy atom type Du. If this is.

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