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  2. https://blogs.ch.cam.ac.uk/pmr/tag/orechem/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/tag/orechem/feed/index.xml
    17 Jan 2022: For example if you go to this blog address and download it, what do you get. ... p p ORE tackles this problem in the context of research and scholarship.
  3. https://blogs.ch.cam.ac.uk/pmr/2007/11/07/crystaleye-using-the-harvest…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/07/crystaleye-using-the-harvester/feed/index.xml
    17 Jan 2022: cam.ac.uk/blogs/murrayrust/?p=797#comment-1179 If one is going to be doing much work like this, it's probably preferable to get a full download and iterate ... pIf one is going to be doing much work like this, it’s probably preferable to get a full
  4. https://blogs.ch.cam.ac.uk/pmr/tag/microsoft/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/tag/microsoft/feed/index.xml
    17 Jan 2022: For example if you go to this blog address and download it, what do you get. ... p p ORE tackles this problem in the context of research and scholarship.
  5. The WellcomeTrust APC spreadsheet (Michelle Brook, Ernesto Priego and …

    https://blogs.ch.cam.ac.uk/pmr/2014/03/27/the-wellcometrust-apc-spreadsheet-ed-michelle-brook-and-community-adds-massive-crowdsourced-value-to-open-access-you-can-help/
    17 Jan 2022: I think this spreadsheet has added a million GBP to Wellcome’s output. ... So what can this spreadsheet be used for? we can download all the full text and search it.
  6. Massively Multiplayer Online Bibliography contrasted with Elsevier’s…

    https://blogs.ch.cam.ac.uk/pmr/2013/08/21/massively-multiplayer-online-bibliography-contrasted-with-elseviers-mendeley/
    17 Jan 2022: This is a primary concern. Wherever you read Mendeley you should add “Elsevier”. ... I challenge this. Elsevier and many others forbid the use of robots indexing subscription material.
  7. Open Climate Data: I cannot find the Spectrum of Carbon Dioxide…

    https://blogs.ch.cam.ac.uk/pmr/2010/06/15/open-climate-data-i-cannot-find-the-spectrum-of-carbon-dioxide-without-violating-copyright/
    17 Jan 2022: Thermo Fisher authorizes you to view, print and download the materials at this Web site (“Site”) only for your personal, non-commercial use, provided that you retain all copyright and other ... I read the terrifying legal conditions and my system
  8. Elsevier charges 3000 USD APC and then retains all rights; is this

    https://blogs.ch.cam.ac.uk/pmr/2013/08/14/elsevier-charges-3000-usd-apc-and-then-retains-all-rights-is-this-openaccess-no-they-then-put-it-behind-paywall-32-usd/
    17 Jan 2022: I was also able to download the PDF. I did this from home, without the help of my University Library. ... I neglected to answer this question earlier. No, I didn’t encounter a paywall.
  9. https://blogs.ch.cam.ac.uk/pmr/2008/04/07/text-mining-the-nih-mandated…

    https://blogs.ch.cam.ac.uk/pmr/2008/04/07/text-mining-the-nih-mandated-papers/feed/index.xml
    17 Jan 2022: This is not the primary problem" My opinion is that this depends on what you intend to do with the content. ... p“Some correspondents suggest the only NIH/PMC barrier is robots.txt – a guide to how and when robots can download.
  10. https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-data/feed/index.xml
    17 Jan 2022: As far as re-use, you can find this where you can download the data (including assay data) in bulk <blockquote> Databases of molecular data on the NCBI FTP site include ... So for your aspirin example I see aspirin listed as being tested in 128 assays.br
  11. petermr's blog | A Scientist and the Web | Page 91

    https://blogs.ch.cam.ac.uk/pmr/page/91/
    17 Jan 2022: The easiest way to do this is to download and print this test document from the British Library’s Secure Electronic Delivery website. ... We strongly recommend that you do this before you try to download a document delivered by secure electronic
  12. petermr's blog | A Scientist and the Web | Page 80

    https://blogs.ch.cam.ac.uk/pmr/page/80/
    17 Jan 2022: You could download this into a spread sheet if you want – we hope to show something exciting on Saturday). ... Unless you are SureChem Pro or PDF subscriber, you may not download, store (in any medium) or transmit the material contained on this Web Site
  13. https://blogs.ch.cam.ac.uk/pmr/2007/04/29/repositories-or-lists-of-ope…

    https://blogs.ch.cam.ac.uk/pmr/2007/04/29/repositories-or-lists-of-open-molecules/feed/index.xml
    17 Jan 2022: We ask that users who download significant portions of the database cite the DrugBank >paper in any resulting publications. ... We ask that users who download significant portions of the database cite the DrugBank >paper in any resulting publications.br /
  14. petermr's blog | A Scientist and the Web | Page 181

    https://blogs.ch.cam.ac.uk/pmr/page/181/
    17 Jan 2022: Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online. ... But first, this is the case with most technical terms (compare “evolution” and
  15. https://blogs.ch.cam.ac.uk/pmr/2007/09/09/webcast-the-power-of-the-eth…

    https://blogs.ch.cam.ac.uk/pmr/2007/09/09/webcast-the-power-of-the-ethesis/feed/index.xml
    17 Jan 2022: p(1, 2) This is all under Caltech’s control so I can’t comment. ... Googling murray-rust and caltech found the presentation on the caltech site, which offers the chance to download necessary media player stuff.
  16. https://blogs.ch.cam.ac.uk/pmr/2011/03/08/scholarly-html-hackfest/feed…

    https://blogs.ch.cam.ac.uk/pmr/2011/03/08/scholarly-html-hackfest/feed/index.xml
    17 Jan 2022: resources, which has since changed themselves also, and the reason I was doing this was. "). ... pdf out of this page, but don't know how to post it.
  17. https://blogs.ch.cam.ac.uk/pmr/tag/add-new-tag/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/tag/add-new-tag/feed/index.xml
    17 Jan 2022: For example if you go to this blog address and download it, what do you get. ... p p ORE tackles this problem in the context of research and scholarship.
  18. petermr's blog | A Scientist and the Web | Page 136

    https://blogs.ch.cam.ac.uk/pmr/page/136/
    17 Jan 2022: This site is now Zotero friendly, courtesy of the unAPI plugin for WordPress. ... PMR: This is typical of the many tools that the group has developed.
  19. https://blogs.ch.cam.ac.uk/pmr/2007/06/10/open-access-is-not-good-enou…

    https://blogs.ch.cam.ac.uk/pmr/2007/06/10/open-access-is-not-good-enough/feed/index.xml
    17 Jan 2022: Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online. ... Download and crunch away.br / This is all common sense, and all comes with the OA territory
  20. https://blogs.ch.cam.ac.uk/pmr/2010/05/09/the-british-librarys-secure-…

    https://blogs.ch.cam.ac.uk/pmr/2010/05/09/the-british-librarys-secure-electronic-delivery/feed/index.xml
    17 Jan 2022: days in which to do this), and use it in effect just once, to print the contents. ... pThe BL Secure (for whom?) electronic delivery system allows me to download an encrypted file from the server (I have 14 days in which to do this), and use it in
  21. Thanks to Journal Info | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/07/13/thanks-to-journal-info/
    17 Jan 2022: It is discussed to add additional journals later this year. What is the reason to the X’s and tick marks? ... JInfo also makes all this information available under CC-BY-NC. Excellent. Is it possible to download the whole database?
  22. Is Figshare Open? "it is not just about open or closed, it is…

    https://blogs.ch.cam.ac.uk/pmr/2015/04/23/is-figshare-open-it-is-not-just-about-open-or-closed-it-is-about-control/
    17 Jan 2022: This is not an easy question and I will try to be objective. ... This is not, per se, reprehensible but it is a strong technical likelihood.
  23. https://blogs.ch.cam.ac.uk/pmr/2006/09/11/do-you-read-journals-or-use-…

    https://blogs.ch.cam.ac.uk/pmr/2006/09/11/do-you-read-journals-or-use-a-database/feed/index.xml
    17 Jan 2022: This appears to be a simultaneous download of many consecutive pages and could look like a systematic attempt to download the issue. ... This appears to be a simultaneous download of many consecutive pages and could look like a systematic attempt to
  24. https://blogs.ch.cam.ac.uk/pmr/2013/02/26/rds2013-okfn-content-mining-…

    https://blogs.ch.cam.ac.uk/pmr/2013/02/26/rds2013-okfn-content-mining-europe-must-legitimize-it/feed/index.xml
    17 Jan 2022: download, and analyze in digital form”. ... This relates to the concept of text or data mining, a subject of many discussions recently.
  25. https://blogs.ch.cam.ac.uk/pmr/2007/10/24/open-notebook-nmr-the-good-a…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/24/open-notebook-nmr-the-good-and-the-ugly/feed/index.xml
    17 Jan 2022: This was exactly one of my points during my NMRShiftDB-critique: Why have 85% of the entries no solvent given in download-file? ... br / This was exactly one of my points during my NMRShiftDB-critique: Why have 85% of the entries no solvent given in
  26. https://blogs.ch.cam.ac.uk/pmr/2008/04/05/can-i-data-and-text-mine-pub…

    https://blogs.ch.cam.ac.uk/pmr/2008/04/05/can-i-data-and-text-mine-pubmed-central/feed/index.xml
    17 Jan 2022: However, you can download download the entire Open Access subset of PubMed Central from <a href="http://www.pubmedcentral.nih.gov/about/ftp.html" rel="nofollow">their FTP service</a>, so ... However, you can download download the entire Open Access
  27. petermr's blog | A Scientist and the Web | Page 68

    https://blogs.ch.cam.ac.uk/pmr/page/68/
    17 Jan 2022: Why would I want to do this? This project is attempting to ask a question by getting computers to “read” as many patents as possible from the recent to the quite ... This was good for the machine, but not much fun for the human.
  28. https://blogs.ch.cam.ac.uk/pmr/category/etd2007/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/etd2007/feed/index.xml
    17 Jan 2022: papers with.br / But what catalysed this was the possibility of authoring theses. ... Download and crunch away.br / This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online.
  29. The British Library’s Secure Electronic Delivery | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2010/05/09/the-british-librarys-secure-electronic-delivery/
    17 Jan 2022: The easiest way to do this is to download and print this test document from the British Library’s Secure Electronic Delivery website. ... We strongly recommend that you do this before you try to download a document delivered by secure electronic
  30. Text-mining the NIH mandated papers | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/04/07/text-mining-the-nih-mandated-papers/
    17 Jan 2022: This is not the primary problem – it is that the papers in PMC still carry restrictive copyright and PMC restricts download from all except the Open Access subset. ... Yes, and I am aware of this and have been working on how to mine it.
  31. petermr's blog | A Scientist and the Web | Page 13

    https://blogs.ch.cam.ac.uk/pmr/page/13/
    17 Jan 2022: What else can we download? After all this is Open Access, isn’t it? ... You may freely download and copy the material contained on this website for your personal, non-commercial use, without any right to resell or redistribute it or to compile or
  32. Scholarly HTML hackfest | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/03/08/scholarly-html-hackfest/
    17 Jan 2022: 1) Download the Docucom pdf driver. It is available free at various places. ... I made a. pdf out of this page, but don’t know how to post it.
  33. petermr's blog | A Scientist and the Web | Page 163

    https://blogs.ch.cam.ac.uk/pmr/page/163/
    17 Jan 2022: Are the robots allowed to download and extract the molecular data without permission:. ... Can my robots download this and turn it into semantic data?
  34. petermr's blog | A Scientist and the Web | Page 83

    https://blogs.ch.cam.ac.uk/pmr/page/83/
    17 Jan 2022: I’ll be looking at these in detail later this morning I hope. ... We have tools that will allow you to download and mine patents and this would be an excellent adventure for early adopters.
  35. Stevan Harnad on "open access" | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/06/12/stevan-harnad-on-open-access/
    17 Jan 2022: Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online. ... This is the sort abject and arbitrary nonsense that takes one’s breath away!
  36. CrystalEye: using the harvester | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/11/07/crystaleye-using-the-harvester/
    17 Jan 2022: This is where XML really starts to show its value over legacy formats. ... If one is going to be doing much work like this, it’s probably preferable to get a full download and iterate over the files.
  37. https://blogs.ch.cam.ac.uk/pmr/category/data/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/data/feed/index.xml
    17 Jan 2022: This is a major impediment to the progress of scholarship in the digital age. ... This can be transformed into a “?” or a block character or even lost.
  38. petermr's blog | A Scientist and the Web | Page 149

    https://blogs.ch.cam.ac.uk/pmr/page/149/
    17 Jan 2022: Note that he is working on making available some Java code to help with the downloadthis should do the caching and remember where you left off. ... The data corpus of CrystalEye, that’s what I would like to download.
  39. cyberscience: extracting crystallography from Elsevier's…

    https://blogs.ch.cam.ac.uk/pmr/2007/07/29/cyberscience-extracting-crystallography-from-elseviers-tetrahedron-via-ccdc/
    17 Jan 2022: LEGAL NOTICE. Unless expressly stated otherwise, information contained in this. message is confidential. ... This CIF is provided on the understanding that it is used for bona. #
  40. OSCAR eats an Open thesis | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/06/09/oscar-eats-an-open-thesis/
    17 Jan 2022: This destroys the formatting, diacritics, tables, subscripts, superscripts – in fact almost everything except the words. ... This entry was posted inBookmark theOne Response to OSCAR eats an Open thesis.
  41. petermr's blog | A Scientist and the Web | Page 108

    https://blogs.ch.cam.ac.uk/pmr/page/108/
    17 Jan 2022: This raises the very important question of where Open Data should be located. ... I first have to save this. This was a quick post to show how the ICE system at USQ can be used to create blogs.
  42. petermr's blog | A Scientist and the Web | Page 131

    https://blogs.ch.cam.ac.uk/pmr/page/131/
    17 Jan 2022: supporting Open Access journals which allow-for much of this this out-of-the-box. ... This is not the primary problem – it is that the papers in PMC still carry restrictive copyright and PMC restricts download from all except the Open Access subset.
  43. petermr's blog | A Scientist and the Web | Page 145

    https://blogs.ch.cam.ac.uk/pmr/page/145/
    17 Jan 2022: At least we are hoping to fix some of this in Systems Biology. ... data. For this reason OSCAR – and any parsing technique – can never be 100% perfect.
  44. petermr's blog | A Scientist and the Web | Page 178

    https://blogs.ch.cam.ac.uk/pmr/page/178/
    17 Jan 2022: But it will have boosted several peoples’ citation counts! Note, of course, that you can only do this exercise with publishers which announce download counts. ... For this to occur we need to make it much easier for people to share, find, download, and
  45. petermr's blog | A Scientist and the Web | Page 162

    https://blogs.ch.cam.ac.uk/pmr/page/162/
    17 Jan 2022: So it’s very exciting when a sponsor agrees to capture this on video. ... You can re-read this blog. What’s broken is:. publishers oppose change.
  46. https://blogs.ch.cam.ac.uk/pmr/2011/07/16/how-to-share-data-and-how-no…

    https://blogs.ch.cam.ac.uk/pmr/2011/07/16/how-to-share-data-and-how-not-to/feed/index.xml
    17 Jan 2022: Perhaps also there could be a download package for all this as zip, tar.gz etc. ... Perhaps also there could be a download package for all this as zip, tar.gz etc…/p.
  47. https://blogs.ch.cam.ac.uk/pmr/2013/05/28/jailbreaking-the-pdf-2-techn…

    https://blogs.ch.cam.ac.uk/pmr/2013/05/28/jailbreaking-the-pdf-2-technical-aspects-glyph-processing/feed/index.xml
    17 Jan 2022: And remember that when I publish with them I have to pay them to do this. ... readable version (http://www.biomedcentral.com/content/download/xml/1471-2180-11-174.xml).
  48. petermr's blog | A Scientist and the Web | Page 42

    https://blogs.ch.cam.ac.uk/pmr/page/42/
    17 Jan 2022: where is the machine-readable list of all articles published under this scheme? ... I , like him, am appalled (a) that this could be considered illegal and.
  49. petermr's blog | A Scientist and the Web | Page 98

    https://blogs.ch.cam.ac.uk/pmr/page/98/
    17 Jan 2022: This is a real honor for us, and we appreciate everyone who nominated. ... permissions. (“you may not download this paper, keep a copy, re-use it in whole or part for any purpose, put it in you repository, etc.”).
  50. petermr's blog | A Scientist and the Web | Page 22

    https://blogs.ch.cam.ac.uk/pmr/page/22/
    17 Jan 2022: This was driven by Keren Limor who put great energy into the event. ... Please help us. Share this thunderclap, and download the button November 18th.
  51. https://blogs.ch.cam.ac.uk/pmr/category/nmr/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/nmr/feed/index.xml
    17 Jan 2022: For example if you go to this blog address and download it, what do you get. ... p p ORE tackles this problem in the context of research and scholarship.

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