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  2. https://blogs.ch.cam.ac.uk/pmr/2007/10/31/dissemination-of-crystaleye/…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/31/dissemination-of-crystaleye/feed/index.xml
    17 Jan 2022: what I know and my experiences of the number of groups who have downloaded PubChem there is no expectation, formal or informal, to ask their permission to download the data. ... on what I know and my experiences of the number of groups who have
  3. NBLAST Desktop

    flybrain.mrc-lmb.cam.ac.uk/si/nblast/www/nblast_desktop/
    7 Jun 2022: See https://gist.github.com/jefferis/bbaf5d53353b3944c090 for further details. You can also download the original registered image data here(2Gb). ... Note the download (8.4Gb) will take a while depending on your distance from Cambridge …. Installation.
  4. https://blogs.ch.cam.ac.uk/pmr/2011/07/16/how-to-share-data-and-how-no…

    https://blogs.ch.cam.ac.uk/pmr/2011/07/16/how-to-share-data-and-how-not-to/feed/index.xml
    17 Jan 2022: Users of journals and the data they contain in articles are not just human readers that manually cut and past or download the data. ... in articles are not just human readers that manually cut and past or download the data.
  5. petermr's blog | A Scientist and the Web | Page 149

    https://blogs.ch.cam.ac.uk/pmr/page/149/
    17 Jan 2022: Andrew Dalke)… and earlier …. … using a system like Amazon’s S3 makes it easy to distribute the data, and cost about US $20 for the bandwidth costs of a 100GB download. ... The data corpus of CrystalEye, that’s what I would like to download.
  6. https://blogs.ch.cam.ac.uk/pmr/2007/12/09/capturing-spectra/feed/index…

    https://blogs.ch.cam.ac.uk/pmr/2007/12/09/capturing-spectra/feed/index.xml
    17 Jan 2022: In any case people can download the data and reuse if it is labeled Open Data on submission (our definition). ... In any case people can download the data and reuse if it is labeled Open Data on submission (our definition).br / Since you are directing
  7. petermr's blog | A Scientist and the Web | Page 163

    https://blogs.ch.cam.ac.uk/pmr/page/163/
    17 Jan 2022: Are the robots allowed to download and extract the molecular data without permission:. ... Can we download and analyse images of experimental results:. YES/NO:. And here is the spectral data.
  8. Privacy & Cookie Policy - Clare Hall

    https://www.clarehall.cam.ac.uk/privacy-policy/
    26 Aug 2022: Visitors to the website can download and extract any location data from images on the website. ... How long we retain your data. If you submit a form, the form and its metadata are retained indefinitely.
  9. Alpha and beta | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/04/25/alpha-and-beta/
    17 Jan 2022: Now ChemZoo is a commercial company, the data are not open (at least not explicitly – can anyone download the whole data base and if so what license covers it) and the ... In contrast Pubchem is open – anyone – like us can download the whole data.
  10. Nature Protocols: How much can we re-use? | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/09/12/nature-protocols-how-much-can-we-re-use/
    17 Jan 2022: Are the robots allowed to download and extract the molecular data without permission:. ... Can we download and analyse images of experimental results:. YES/NO:. And here is the spectral data.
  11. Cambridge University Reporter Special

    https://www.reporter.admin.cam.ac.uk/reporter/2005-06/special/09/3.html
    28 Jan 2022: where this information has been provided in the catalogue entry. Newly-added records will include the vernacular data. ... It also provides the opportunity to download the data into geographic information systems, etc., for manipulation.
  12. Massively Multiplayer Online Bibliography contrasted with Elsevier’s…

    https://blogs.ch.cam.ac.uk/pmr/2013/08/21/massively-multiplayer-online-bibliography-contrasted-with-elseviers-mendeley/
    17 Jan 2022: So Mendeley has, and will keep, an open API from which you can download all the bibliographic metadata you wish. ... Users may access, download, copy, display, redistribute, adapt, translate, text mine and data mine the articles provided that:.
  13. Open Science is more than Open Access and Open Data; all of us can…

    https://blogs.ch.cam.ac.uk/pmr/2011/12/03/open-science-is-more-than-open-access-and-open-data-all-of-us-can-get-involved/
    17 Jan 2022: way to filter and easily download the data, a thing that is needed to make the data usable). ... usable for other scientists. We think that open science should not only mean that the data itself is shared.
  14. https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-data/feed/index.xml
    17 Jan 2022: As far as re-use, you can find this where you can download the data (including assay data) in bulk <blockquote> Databases of molecular data on the NCBI FTP site include ... So for your aspirin example I see aspirin listed as being tested in 128 assays.br
  15. How to share data and how not to | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/07/16/how-to-share-data-and-how-not-to/
    17 Jan 2022: If you download the file as an XML, you can get the data as an HTML table (not perfect, but better than an image). ... Users of journals and the data they contain in articles are not just human readers that manually cut and past or download the data.
  16. "Dialogue" with Elsevier – story-1 (Will Elsevier publish…

    https://blogs.ch.cam.ac.uk/pmr/2016/05/24/dialogue-with-elsevier-story-1-will-elsevier-publish-crystallographic-data/
    17 Jan 2022: Since the data itself is uncopyrightable, and since a journal is not a database covered by European sui generis database rights, I can therefore download all CIFs as part of my ... personal non-commercial research and I can publish the data from that
  17. EVALUATING GOOGLE TRENDS AS A PRIMARY CARE RESEARCH TOOL

    https://www.phpc.cam.ac.uk/pcu/files/2022/05/Maisie-Fitzgerald-Evaluating-Google-Trends.pdf
    3 May 2022: of the data from patients. 9 members of the Cambridge University Hospitals (CUH) PPI Panel were. ... from the data on access to and experiences of primary care and were summarised as “highly.
  18. https://blogs.ch.cam.ac.uk/pmr/category/crystaleye/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/crystaleye/feed/index.xml
    17 Jan 2022: the data, and cost about US $20 for the bandwidth costs of a 100GB download. ... Of course then I think we will go back to the forking off of the data.
  19. https://blogs.ch.cam.ac.uk/pmr/2013/02/26/rds2013-okfn-content-mining-…

    https://blogs.ch.cam.ac.uk/pmr/2013/02/26/rds2013-okfn-content-mining-europe-must-legitimize-it/feed/index.xml
    17 Jan 2022: This relates to the concept of text or data mining, a subject of many discussions recently. ... One of the big proponents of text and data mining is Cambridge University chemistPeter Murray Rust. [.]
  20. https://blogs.ch.cam.ac.uk/pmr/2007/11/05/crystaleye-and-repositories-…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/05/crystaleye-and-repositories-distribution-and-integrity-cont/feed/index.xml
    17 Jan 2022: The data corpus of CrystalEye, that's what I would like to download. ... But my interest would not be in setting up CrystalEye2, but would be to have access to the data to: - link to CrystalEye entries (assuming the CMLs contains a CrystalEye identifier)
  21. EDCTP Contract N0 RIA2020EF-2918 Rapid diagnostics for COVID-19:…

    https://afridx.ceb.cam.ac.uk/files/d7.1_-_report_and_dataset_on_legal_and_regulatory_landscape_v2.2.pdf
    21 Jul 2022: However, the available methods to download this dataset would only provide up to 10,000 records leaving a gap in the data. ... The data was deduplicated and filtered according to status, with only active or pending patents included and expired or
  22. https://blogs.ch.cam.ac.uk/pmr/2007/10/13/frog-not-just-free-but-open-…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/13/frog-not-just-free-but-open-prodrg-take-note/feed/index.xml
    17 Jan 2022: Please clean this statement up in your multiple posts. The FAQ page at http://www.chemspider.com/FAQ.aspx declares "May I download the data and use it in my own ... declaresbr / “May I download the data and use it in my own database(s)?br / You have
  23. https://blogs.ch.cam.ac.uk/pmr/2007/11/02/derivative-use-of-open-acces…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/02/derivative-use-of-open-access-works/feed/index.xml
    17 Jan 2022: hold in an SDFile as far as I know without corrupting the data.</i> "Corruption" is a strong word. ... The data distribution site does not need to be on the same machine as your service.
  24. Chemspider and Pubchem – open data | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/11/30/chemspider-and-pubchem-open-data/
    17 Jan 2022: If Chemspider allows the direct download and re-use of their data from their site then I also congratulate them. ... As far as re-use, you can find this where you can download the data (including assay data) in bulk.
  25. FAQ How do I get in touch Contact Maike ...

    https://www.stemcells.cam.ac.uk/files/genomics_-_faq_2021.pdf
    18 Feb 2022: How will I receive the sequencing data. Once your sequencing run has finished, we will send you information on how to download the data over FTP. ... To avoid incorporating noisy data from dead cells in your experiment, 10X Genomics provides a
  26. https://blogs.ch.cam.ac.uk/pmr/2007/10/24/open-notebook-nmr-motivation…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/24/open-notebook-nmr-motivations-and-confusions/feed/index.xml
    17 Jan 2022: If you cannot download the data and remove bad data points etc and return the data to Christoph/NMRShiftDB with commentary then I remain confused about the rights around Open Data.] ... I thought it was.br / [If you cannot download the data and remove
  27. petermr's blog | A Scientist and the Web | Page 80

    https://blogs.ch.cam.ac.uk/pmr/page/80/
    17 Jan 2022: There is no algorithm to expose the whole data. By contrast you can, in principle, download the whole of an Open system. ... We must know that – in principle – we have the absolute right to download and re-purpose the data.
  28. https://blogs.ch.cam.ac.uk/pmr/2009/03/10/approaches-to-compound-docum…

    https://blogs.ch.cam.ac.uk/pmr/2009/03/10/approaches-to-compound-documents-ore-pdf-docx/feed/index.xml
    17 Jan 2022: edu:8080/m1/ For those public studies people can download all the raw data and all the annotated and result data and even the underlying software. ... our experiments and download RAW and processed data and all needed software and that can only be topped
  29. https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/feed/index.xml
    17 Jan 2022: However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is useful. ... and other bioinformatics data sets, as well as PubChem, has been that some sort of
  30. https://blogs.ch.cam.ac.uk/pmr/2007/04/24/world-wide-molecular-matrix-…

    https://blogs.ch.cam.ac.uk/pmr/2007/04/24/world-wide-molecular-matrix-pubchem-quality-metrics-etc/feed/index.xml
    17 Jan 2022: denominator.” After analyzing the data, over 200,000 individual chemical shifts I can say DON’T judge by the lowest common denominator. ... These are truly excellent statistics if you consider that this is an open access system where people are
  31. https://blogs.ch.cam.ac.uk/pmr/2007/10/14/open-data-driven-science-and…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/14/open-data-driven-science-and-a-brokering-system-for-ons/feed/index.xml
    17 Jan 2022: the link is here: http://www.chemspider.com/blog/?p=191 Two people have commented so tonight I looked for the CrystalEye data to download but cannot find the download site. ... looked for the CrystalEye data to download but cannot find the download site.
  32. petermr's blog | A Scientist and the Web | Page 146

    https://blogs.ch.cam.ac.uk/pmr/page/146/
    17 Jan 2022: In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML file. ... This is the approach we have adopted (Jim Downing wrote it specifically to help the
  33. petermr's blog | A Scientist and the Web | Page 189

    https://blogs.ch.cam.ac.uk/pmr/page/189/
    17 Jan 2022: Now ChemZoo is a commercial company, the data are not open (at least not explicitly – can anyone download the whole data base and if so what license covers it) and the ... In contrast Pubchem is open – anyone – like us can download the whole data.
  34. https://blogs.ch.cam.ac.uk/pmr/tag/open-data/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/tag/open-data/feed/index.xml
    17 Jan 2022: There is no explicit mention of the right to download material for data-mining and a lot of verbiage about “consistency with publishers’s policies” which is no help to scientists ... and want to read the file, download the zip file, unzip it, point
  35. Open metabolomics data | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/05/04/open-metabolomics-data/
    17 Jan 2022: granted permission to publish the data (and metadata). If interested, please find below a link to our public studies that are  composed of experimental design metadata as well as processed  metabolite ... So, in  principle, anyone could download our
  36. https://blogs.ch.cam.ac.uk/pmr/tag/data-curation-hamburger/feed/index.…

    https://blogs.ch.cam.ac.uk/pmr/tag/data-curation-hamburger/feed/index.xml
    17 Jan 2022: What I would really need is the digital raw data…preferably in some open format, which I can download, look at and work on. ... to realise that the data they produce has value beyond the immediate research project for which it was produced.
  37. CrystalEye and repositories: distribution and integrity |…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/04/crystaleye-and-repositories-distribution-and-integrity/
    17 Jan 2022: Now imagine that a spider starts to download the entries and “finishes” a month later. ... However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is
  38. Open Data | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/11/17/open-data/
    17 Jan 2022: This is the approach we have adopted (Jim Downing wrote it specifically to help the community download the data and has made it available under Open Source). ... Repositories in general do not archive data. The work can be re-used.
  39. https://blogs.ch.cam.ac.uk/pmr/2011/11/25/the-scandal-of-publisher-for…

    https://blogs.ch.cam.ac.uk/pmr/2011/11/25/the-scandal-of-publisher-forbidden-textmining-the-vision-denied/feed/index.xml
    17 Jan 2022: As I did my PhD in Denmark (DTU), I naively wrote a robot to download the issues of a well known chemical data journal. ... 0000 /pmr/2011/11/25/the-scandal-of-publisher-forbidden-textmining-the-vision-denied/#comment-3266 Saying the data is in the
  40. https://blogs.ch.cam.ac.uk/pmr/2011/11/15/semantic-molecular-future-ar…

    https://blogs.ch.cam.ac.uk/pmr/2011/11/15/semantic-molecular-future-article-accesses-during-first-30-days/feed/index.xml
    17 Jan 2022: Yes, its a shame that BMC don't make the download data public. ... Yes, its a shame that BMC don’t make the download data public.
  41. Open Data – 2 | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/11/19/open-data-2/
    17 Jan 2022: But the data world needs a generic term for the same reason that the publication world does. ... In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML
  42. Capturing SPECTRa | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/12/09/capturing-spectra/
    17 Jan 2022: In any case people can download the data and reuse if it is labeled Open Data on submission (our definition). ... Because tools are Open Source it doesn’t follow that the data are.
  43. Leo Waaijers: DARE to Inspire | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/03/14/leo-waaijers-dare-to-inspire/
    17 Jan 2022: I could download one and within a minute[] OSCAR had read much of the chemical data from it. ... It changes the way we should capture and publish data. The Netherlands can justly feel proud in leading the world with the coherence and commitment of their
  44. CrystalEye and repositories: distribution and integrity (cont) |…

    https://blogs.ch.cam.ac.uk/pmr/2007/11/05/crystaleye-and-repositories-distribution-and-integrity-cont/
    17 Jan 2022: PMR: see intro] […]. However, I would suggest that the experience with GenBank and other bioinformatics data sets, as well as PubChem, has been that some sort of bulk download is useful. ... The data corpus of CrystalEye, that’s what I would like to
  45. What is strongOA? | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/04/30/what-is-strongoa/
    17 Jan 2022: OA means that any user, anywhere, who has access to the Internet, may link, read, download, store, print-off, use, and data-mine the digital content of that article [PMR: without ... These include the BBB declarations [above] and the The Open Knowledge
  46. https://blogs.ch.cam.ac.uk/pmr/2007/09/24/cdks-diazonamide-and-general…

    https://blogs.ch.cam.ac.uk/pmr/2007/09/24/cdks-diazonamide-and-general-thoughts-on-openness/feed/index.xml
    17 Jan 2022: The deposition process is under beta-testing and anyone can download the data (we will give away the entire structure collection shortly). ... The deposition process is under beta-testing and anyone can download the data (we will give away the entire
  47. Depositor's checklist | Research Data Management

    https://www.data.cam.ac.uk/depositors-checklist
    9 Nov 2022: you may still wish to have a Readme file that users can download together with your data files. ... OneDrive, Dropbox, Google Drive) to your data so that we can download the files.
  48. experiment and theory – the liberation of data and source |…

    https://blogs.ch.cam.ac.uk/pmr/2007/05/03/experiment-and-theory/
    17 Jan 2022: These are truly excellent statistics if you consider that this is an open access system where people are depositing data, that these data are free to download and utilize even for ... The data in the literature can be awful – some measurements differ
  49. Open Data Means Better Science | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/07/02/open-data-means-better-science/
    17 Jan 2022: Cambridge. What’s Open Data? By open data we mean that it is freely available on the public internet permitting any user to download, copy, analyse, re-process, pass them to ... Open data button is a easier way to access the data with no tension of
  50. petermr's blog | A Scientist and the Web | Page 126

    https://blogs.ch.cam.ac.uk/pmr/page/126/
    17 Jan 2022: When we did try scraping the data our best estimate was about 90,000. ... So, in  principle, anyone could download our data and prove us wrong (or hopefully, concur with our findings), and we hope that our  repositories (SetupX and BinBase) will become
  51. Dissemination of CrystalEye | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/10/31/dissemination-of-crystaleye/
    17 Jan 2022: These are almost completely orthogonal. Copying the data and redisseminating without reference to the originators it is, in effect, forking (see below). ... I wish you luck resolving this so that we can access the data.

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