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  2. petermr's blog | A Scientist and the Web | Page 114

    https://blogs.ch.cam.ac.uk/pmr/page/114/
    17 Jan 2022: For those public studies people can download all the raw data and all the annotated and result data and even the underlying software. ... our experiments and download RAW and processed data and all needed software and that can only be topped by Open
  3. Electronic Theses (ETD2007) | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/06/08/electronic-theses-etd2007/
    17 Jan 2022: All data must be included in theses. Data must be validated before submission. ... In all cases I was told that for existing theses this was not allowed.
  4. Open Access and Fuzzy Access | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/05/05/open-access-and-fuzzy-access/
    17 Jan 2022: All rights reserved. This is incompatible with the BOAI declaration of Open Access, which states:. ... Perhaps Dietrich can help? On a more technical note. It is actually not easy to download all the molecules from Molecules.
  5. Webcast: the power of the eThesis | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/09/09/webcast-the-power-of-the-ethesis/
    17 Jan 2022: Googling murray-rust and caltech found the presentation on the caltech site, which offers the chance to download necessary media player stuff. ... 1, 2) This is all under Caltech’s control so I can’t comment.
  6. cyberscience: Labels and licences | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/07/24/cyberscience-labels-and-licences/
    17 Jan 2022: I have an absolute need to know precisely what the status of a paper is – effectively can my robots download it without the publisher cutting off all supply to journals to
  7. https://blogs.ch.cam.ac.uk/pmr/category/semanticweb/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/semanticweb/feed/index.xml
    17 Jan 2022: download all the raw data and all the annotated and result data and even the underlying software. ... our experiments and download RAW and processed data and all needed software and that can only be topped by Open NoteBook Science, the purest form of
  8. petermr's blog | A Scientist and the Web | Page 63

    https://blogs.ch.cam.ac.uk/pmr/page/63/
    17 Jan 2022: I can for example download all BMC content whenever I wish , subject only to the courtesy of agreeing a robot-friendly protocol when I want. ... Can I systematically download all Green material from the 100 UK repositories?
  9. https://blogs.ch.cam.ac.uk/pmr/2007/10/16/why-green-open-access-does-n…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/16/why-green-open-access-does-not-support-text-and-data-mining/feed/index.xml
    17 Jan 2022: Once it's over, and we have 100% Green OA, all this papyrophrenic nonsense can be dropped. ... there whenever a user wants to read and download it, rather than just to search and surf the entire corpus via SciBorg.br / Not only does this all sound silly:
  10. The destruction of semantic data: The PLoS community replies |…

    https://blogs.ch.cam.ac.uk/pmr/2011/07/17/the-destruction-of-semantic-data-the-plos-community-replies/
    17 Jan 2022: Perhaps also there could be a download package for all this as zip, tar.gz etc…. ... that all of their data is rendered correctly, in all the various permutations of formats and media types.
  11. Repositories or Lists of Open Molecules | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/04/29/repositories-or-lists-of-open-molecules/
    17 Jan 2022: By Open I mean that anyone can, in principle download, copy or clone part or all of the site, re-use the information and redistribute without reference to the original site. ... We ask that users who download significant portions of the database cite the
  12. petermr's blog | A Scientist and the Web | Page 163

    https://blogs.ch.cam.ac.uk/pmr/page/163/
    17 Jan 2022: Basic rule of all researchers: “make your work is digitally traceable, searchable, harvestable”. ... Kind regards. Tobias Kind. fiehnlab.ucdavis.edu. No, not too radical at all.
  13. Text-mining the NIH mandated papers | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/04/07/text-mining-the-nih-mandated-papers/
    17 Jan 2022: This is not the primary problem – it is that the papers in PMC still carry restrictive copyright and PMC restricts download from all except the Open Access subset. ... Some correspondents suggest the only NIH/PMC barrier is robots.txt – a guide to
  14. Downloading Zoom Cloud Recordings Method 1: Via your web ...

    https://help.eng.cam.ac.uk/wp-content/uploads/2022/01/Downloading-Zoom-Cloud-Recordings_compressed.pdf
    12 Jan 2022: 5. Press the ‘Download (x files)’ button to download ALL the media files associated with your session. ... 6. Press the ‘Download (x files)’ button to download ALL the media files associated with your session.
  15. petermr's blog | A Scientist and the Web | Page 59

    https://blogs.ch.cam.ac.uk/pmr/page/59/
    17 Jan 2022: through a standardized open API or via download from a standard specified location). ... After all what does objectivity matter? Posted inPosted on September 15, 2011 by pm286.
  16. Information-mining: Discussions with Wiley | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2012/03/09/information-mining-discussions-with-wiley/
    17 Jan 2022: Computing the human metabolome. Again we have to find all instances where compounds have been mentioned that might be human metabolites. ... There is no need to involve CUL in details. All we need is:.
  17. Why Green Open Access does not support text- and data-mining |…

    https://blogs.ch.cam.ac.uk/pmr/2007/10/16/why-green-open-access-does-not-support-text-and-data-mining/
    17 Jan 2022: This isn’t easy since almost all articles are copyrighted and non-distributable. ... Once it’s over, and we have 100% Green OA, all this papyrophrenic nonsense can be dropped.
  18. The benefits and limitations of Green Open Access | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/07/20/the-benefits-and-limitations-of-green-open-access/
    17 Jan 2022: I can for example download all BMC content whenever I wish , subject only to the courtesy of agreeing a robot-friendly protocol when I want. ... Can I systematically download all Green material from the 100 UK repositories?
  19. petermr's blog | A Scientist and the Web | Page 131

    https://blogs.ch.cam.ac.uk/pmr/page/131/
    17 Jan 2022: been published, and until any publishers’ or funders’ embargo period has expired.” Kudos to all involved. ... This is not the primary problem – it is that the papers in PMC still carry restrictive copyright and PMC restricts download from all
  20. Mendeley API Binary Battle: IsItOpenData? | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/03/10/mendeley-api-binary-battle-isitopendata/
    17 Jan 2022: The presence of John Wilbanks on the team. My acid test is” Can I systematically download all of the data in the Mendeley data base, transform it to my own format, ... Hi Peter,. All very good and valid questions raised there. To answer you acid test:
  21. Nature Protocols: How much can we re-use? | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/09/12/nature-protocols-how-much-can-we-re-use/
    17 Jan 2022: My robots can download it and interpret the structure. But technically it’s an image. ... Are the robots allowed to download and extract the molecular data without permission:.
  22. STATISTICS Part IBExample Sheet 3 (of 3) Lent 2022 ...

    https://www.dpmms.cam.ac.uk/study/IB/Statistics/2021-2022/Qu3.pdf
    13 Jan 2022: a random set C(Y ) such that Pβ,σ2 (b C(Y )) = 1 α for all β,σ2. ... What is theshape of this confidence set? 12. (Optional) Download R from http://cran.r-project.org/.
  23. #scholrev: Strategy and decentralisation | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2013/03/24/scholrev-strategy-and-decentralisation/
    17 Jan 2022: Strongly integrated into all OA tools/citation managers, etc. Why hasn’t this happened already? ... But both suggest that we should have some or all of our work outside the current academic infrastructure.
  24. Open API (or glorious API?) | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/09/15/open-api-or-glorious-api/
    17 Jan 2022: It does not keep the lawyers away. we cannot make all our catalog. ... data available for bulk download. That is a limitation we all regret.
  25. petermr's blog | A Scientist and the Web | Page 42

    https://blogs.ch.cam.ac.uk/pmr/page/42/
    17 Jan 2022: where is the machine-readable list of all articles published under this scheme? ... I wish to download and analyze all of them. Thanks in advance for your answers.
  26. Stevan Harnad on "open access" | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/06/12/stevan-harnad-on-open-access/
    17 Jan 2022: Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online. ... software, and with (2c) multimedia — all the wrong stuff and irrelevant to OA).
  27. "open access" is not good enough | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2007/06/10/open-access-is-not-good-enough/
    17 Jan 2022: Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online. ... software, and with (2c) multimedia — all the wrong stuff and irrelevant to OA).
  28. petermr's blog | A Scientist and the Web | Page 21

    https://blogs.ch.cam.ac.uk/pmr/page/21/
    17 Jan 2022: Do I have to share it? Do I have to share it all? ... The idea is simple. Download all the links to papers, and then read the papers [NOTE: we’ll only do what we are allowed to do, and we promise not to
  29. petermr's blog | A Scientist and the Web | Page 154

    https://blogs.ch.cam.ac.uk/pmr/page/154/
    17 Jan 2022: Says:. Peter, all that is needed to perform the calculations for comparison using the ACD/Labs NMR predictors is a download of the exact dataset Christoph provided to you (we have ... This isn’t easy since almost all articles are copyrighted and
  30. petermr's blog | A Scientist and the Web | Page 187

    https://blogs.ch.cam.ac.uk/pmr/page/187/
    17 Jan 2022: However, we WILL redeposit all curated data originally sourced from PubChem back to PubChem. ... Perhaps Dietrich can help? On a more technical note. It is actually not easy to download all the molecules from Molecules.
  31. Open Data in Science | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/01/06/open-data-in-science/
    17 Jan 2022: If there is at least ONE, SINGLE FULLY ASSIGNED C-NMR automatically generated by OSCAR-3, please let us all know the URL, where to download it. ... 2) I’m in the middle of curating all chemical structures on Wikipedia.
  32. petermr's blog | A Scientist and the Web | Page 146

    https://blogs.ch.cam.ac.uk/pmr/page/146/
    17 Jan 2022: In all these it’s commonplace to download the whole data – for example we state “Each MACiE entry in the database can be downloaded separately as a CML file. ... The rest is not always true. Almost all these are major problems for Open Data.
  33. petermr's blog | A Scientist and the Web | Page 99

    https://blogs.ch.cam.ac.uk/pmr/page/99/
    17 Jan 2022: The PDF required me to download a closed-source proprietary plugin from Adobe. ... Is that all academia is about? Helping the publishers certify their page count?
  34. petermr's blog | A Scientist and the Web | Page 160

    https://blogs.ch.cam.ac.uk/pmr/page/160/
    17 Jan 2022: need all the tricks you can get with XSLT) had the same reaction:. ... Is there anywhere that has chemical images that I can download that fulfils all these permissions?
  35. petermr's blog | A Scientist and the Web | Page 181

    https://blogs.ch.cam.ac.uk/pmr/page/181/
    17 Jan 2022: Download and crunch away. This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online. ... software, and with (2c) multimedia — all the wrong stuff and irrelevant to OA).
  36. How to share data and how not to | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2011/07/16/how-to-share-data-and-how-not-to/
    17 Jan 2022: Perhaps also there could be a download package for all this as zip, tar.gz etc…. ... This is exactly what PLoS should be doing – in fact all publishers should.
  37. petermr's blog | A Scientist and the Web | Page 26

    https://blogs.ch.cam.ac.uk/pmr/page/26/
    17 Jan 2022: User Rights. All articles published Open Access will be immediately and permanently free for everyone to read and download. ... Sponsored articles are freely available to all readers. Click here for more information.
  38. petermr's blog | A Scientist and the Web | Page 33

    https://blogs.ch.cam.ac.uk/pmr/page/33/
    17 Jan 2022: 5. Where is the machine-readable list of all articles published under this scheme? ... I wish to download and analyze all of them. At this time we do not publish a separate machine-readable list of all sponsored articles, but I will share this suggestion
  39. petermr's blog | A Scientist and the Web | Page 129

    https://blogs.ch.cam.ac.uk/pmr/page/129/
    17 Jan 2022: IUCr’s Acta Crystallographica E is now Open Source. In principle we could download all the papers and mount them on our site. ... We also mount data under various data and code licences. Anyone can download it without our permission.
  40. petermr's blog | A Scientist and the Web | Page 91

    https://blogs.ch.cam.ac.uk/pmr/page/91/
    17 Jan 2022: Grant of Licence and Use of Data. You may print or download Content from the Service for your own personal use, provided that you keep intact all copyright and other proprietary ... Not all of the material in our collection is covered by such licences.
  41. petermr's blog | A Scientist and the Web | Page 13

    https://blogs.ch.cam.ac.uk/pmr/page/13/
    17 Jan 2022: What else can we download? After all this is Open Access, isn’t it? ... We are all aware (or we should be) of the dire effects of human-made climate change.
  42. petermr's blog | A Scientist and the Web | Page 41

    https://blogs.ch.cam.ac.uk/pmr/page/41/
    17 Jan 2022: Creative. Commons is at a crossroads.This decisive moment will in all likelihood. ... I wish to download and analyze all of them. ELS: Through your affiliation with Cambridge University you are able to text mine all our content, not only the open access
  43. petermr's blog | A Scientist and the Web | Page 122

    https://blogs.ch.cam.ac.uk/pmr/page/122/
    17 Jan 2022: In graphs, molecular structures, text, etc. It would be fairly straightforward to download all the world’s published chemistry and check it for errors. ... I’ve just lost all my data. I’ve lost all my data again.
  44. petermr's blog | A Scientist and the Web | Page 14

    https://blogs.ch.cam.ac.uk/pmr/page/14/
    17 Jan 2022: So what can this spreadsheet be used for? we can download all the full text and search it. ... There may be more – I haven’t done all 418 – volunteers would be welcome).
  45. petermr's blog | A Scientist and the Web | Page 69

    https://blogs.ch.cam.ac.uk/pmr/page/69/
    17 Jan 2022: ALL VISITORS SHOULD SIGN IN. Posted inPosted on March 10, 2011 by pm286. ... The presence of John Wilbanks on the team. My acid test is” Can I systematically download all of the data in the Mendeley data base, transform it to my own format,
  46. 1 | P a g e Practioner Professional Development ...

    https://www.educ.cam.ac.uk/courses/ppd/ppd-policies/PPDAdmissionsGuide2013.pdf
    2 Sep 2022: All personal data will be handled confidentially and in compliance with the Data Protection Act. ... Course Managers are responsible for assessing all applications and making a decision on admission.
  47. petermr's blog | A Scientist and the Web | Page 188

    https://blogs.ch.cam.ac.uk/pmr/page/188/
    17 Jan 2022: By Open I mean that anyone can, in principle download, copy or clone part or all of the site, re-use the information and redistribute without reference to the original site. ... Bring on the SWORD, y’all. I’ll wield that baby, you betcha.
  48. https://blogs.ch.cam.ac.uk/pmr/category/etd2007/feed/index.xml

    https://blogs.ch.cam.ac.uk/pmr/category/etd2007/feed/index.xml
    17 Jan 2022: almost all) – are keen for their data to be stored safely and indefinitely. ... Download and crunch away.br / This is all common sense, and all comes with the OA territory when the author makes his full-text freely accessible for all, online.
  49. petermr's blog | A Scientist and the Web | Page 83

    https://blogs.ch.cam.ac.uk/pmr/page/83/
    17 Jan 2022: There’s no shame in that whatever. We all have day jobs, including myself. ... And that’s the point. I think we could all say of the chemistry.
  50. I ask Elsevier for their list of articles published as “hybrid Open…

    https://blogs.ch.cam.ac.uk/pmr/2012/07/27/i-ask-elsevier-for-their-list-of-articles-published-as-hybrid-open-access/
    17 Jan 2022: I wish to download and analyze all of them. Thanks in advance for your answers. ... I wish to download and analyze all of them. Through your affiliation with Cambridge University you are able to text mine all our content, not only the open access articles
  51. Robots can detect error; but images MUST be Open | petermr's blog

    https://blogs.ch.cam.ac.uk/pmr/2008/05/29/robots-can-detect-error-but-images-must-be-open/
    17 Jan 2022: In graphs, molecular structures, text, etc. It would be fairly straightforward to download all the world’s published chemistry and check it for errors. ... They don’t work on all papers. But we’d like to see if we can detect errors.

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