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flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:f…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:frechter2018:start -
NBLAST Desktop
flybrain.mrc-lmb.cam.ac.uk/si/nblast/www/nblast_desktop/7 Jun 2022: See https://gist.github.com/jefferis/bbaf5d53353b3944c090 for further details. You can also download the original registered image data here(2Gb). ... Note the download (8.4Gb) will take a while depending on your distance from Cambridge …. Installation. -
si:masse2012 - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=si:masse2012This includes an easy installer script that will download sample data including:. -
si:frulhns:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=si:frulhns:startStart R # install (one time only) install.packages("IgorR") # code to read Igor binary files (Greg) install.packages("STAR") # code for Spike Train Analysis from Christophe Pouzat # download gphys package from ... note that this download includes full -
si:auer2019:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=si:auer2019:startThe resultant registrations are available for download at. -
warping_manual:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:startIntroduction. In collaboration with Chris Potter (when he was in Liqun Luo's lab) and Torsten Rohlfing (formerly Stanford, SRI, now at Google) I have developed/applied techniques for mapping different fly brains into a common frame of reference and -
si:frechter2018:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=si:frechter2018:startData Download. In addition to the repositories above, we also provide a packaged version of our annotated library of LHN morphologiesLog In. -
pub:neuroanatomy:fru:start - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=pub:neuroanatomy:fru:startNote that some downloads will require a (free and automatic) registration on our sister siteCorrespondences between nomenclature for different studies of fruitless neuron anatomy. -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=pub:…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=pub:neuroanatomy:fru:start -
Finding the mAL Neurons
flybrain.mrc-lmb.cam.ac.uk/si/nblast/knitr/mAL.html3 Apr 2015: Blast this query neuron against all for mean scores. Use a remote score matrix restricted to mAL neurons to save download time:. -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:m…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:masse2012This includes an [[https://github.com/jefferis/FruCloneClustering/blob/master/src/Easy_Install_Masse.m|easy installer script]] that will ... m|download sample data]] including: -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:f…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:frulhns:starttime only) install.packages("IgorR") # code to read Igor binary files (Greg) install.packages("STAR") # code for Spike Train Analysis from Christophe Pouzat # download gphys package from Jefferis lab website to ... gphys # get help on main plot function -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:a…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:auer2019:startThis made use of the [[https://github.com/jefferis/fiji-cmtk-gui|Fiji CMTK plugin]]. The resultant registrations are available for download at [[https://github.com/jefferislab/DrosophilidBridgingRegistrations]]. -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=warp…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=warping_manual:startPublished Information ====== The original [[http://www.cell.com/content/article/fulltext?uid=PIIS0092867407002048|Cell paper]] and [[http://download.cell.com/supplementarydata/cell/128/6/1187/DC1/mmc1.pdf|Supplemental Information]] ... projects/cmtk|CMTK -
si:grosjean_and_silbering_2011 - Jefferis Lab DokuWiki
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=si:grosjean_and_silbering_2011IN PROGRESS. Prepare R data package for download. Traced neurons that have been registered to standard brain are available as. -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:g…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=si:grosjean_and_silbering_2011 -
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=warp…
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?do=export_raw&id=warping_manual:registration_guiYou will likely also need to install a copy of [[http://fiji.sc/wiki/index.php/Downloads|Fiji/ImageJ]] to save your images in the preferred input format -
Readme
flybrain.mrc-lmb.cam.ac.uk/dokuwiki/lib/exe/fetch.php?media=warping_manual:readme_2012.pdf9 Jun 2018: Installation1. To install download the IGSRegistrationTools.zip file and expand by double clicking.
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