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Wolbachia‐mediated protection against viruses in the…
www.jiggins.gen.cam.ac.uk/pdfs/cattel2016b.pdf5 Dec 2016: Survival assay. In order to test for a potential protective effect of wSuz, we. ... 2011) Spotted wing Drosophila infestation of Cal-. ifornia strawberries and raspberries: economic analysis of. -
PNAS202122734_proof
www.jiggins.gen.cam.ac.uk/pdfs/alves2022.pdf24 Aug 2022: 131. 111. 5.16. 4. Mantel test: P < 0.001; Fig. 5A, red points, excluding Sydneyand Cattai). ... to its speed, magnitude, geographical range, and known origin,provide an ideal dataset to test population genetics theory. -
Wolbachia in European Populations of the Invasive Pest Drosophila…
www.jiggins.gen.cam.ac.uk/pdfs/cattel2016.pdf22 Jul 2016: We tested for the existence of differences between samplings by using Fisher’sexact test. ... the trend was notsignificant (Fisher’s exact test, P = 0.74 and P = 0.05 respectively). -
g06-075 1215..1226
www.jiggins.gen.cam.ac.uk/pdfs/Wilfert2006genome.pdf10 Oct 2007: Since linked. markers are not mutually independent, we did not perform aBonferroni test. ... Instead, we used a threshold of p < 0.01 toaccount for the large number of tests. -
pone.0006838 1..11
www.jiggins.gen.cam.ac.uk/pdfs/Carpenter2009.pdf18 Sep 2009: considerable economic and medical importance. For example,. viruses have had devastating economic consequences on honey-. ... bottles using a standard CO2 test [19]. We performed 5 dye swap replicates (10 arrays) on the males. -
A robust automated system elucidates mouse homecage behavioral…
www.jiggins.gen.cam.ac.uk/pdfs/Gouldingetal2008.pdf12 Apr 2011: Ifsignificant interaction is present, an asterisk indicates significant difference( 0.05) by posthoc t test. ... For instance, incomparing the daily amount of food, water, and movement a correction wasmade for 3 tests. -
OP-VEVO150015 1..12
www.jiggins.gen.cam.ac.uk/pdfs/longdon2015b.pdf18 Nov 2015: people per year with an estimated economic cost of $8.6billion (US) (Hampson et al. ... Branch support was estimated usingApproximate Likelihood-Ratio Tests (aLRT) that are reported tooutperform bootstrap methods (Anisimova and Gascuel 2006).Figures were -
Parallel and costly changes to cellular immunity underlie the…
www.jiggins.gen.cam.ac.uk/pdfs/mcgonigle2017.pdf16 Nov 2017: evolve resistance. Aside from its economic and health impact, this variation provides a power-. ... as a p value of <0.05 (Tukey multiple comparison test) and these differences are only considering comparisonswithin a given panel. -
15566153538820 1..21
www.jiggins.gen.cam.ac.uk/pdfs/duxbury2019.pdf30 Apr 2019: formally test whether a history of coevolution alters the amount and nature of genetic variation. ... evolution (Longdon et al., 2011b). To test whether selection by viruses increases the amount of. Results that match 1 of 2 words
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doi:10.1098/rsbl.2007.0373
www.jiggins.gen.cam.ac.uk/pdfs/weinert07.pdf19 Feb 2008: p!0.05, p!0.01 and p!0.001 significancevalues are uncorrected for multiple tests.). species name locationasamplesize sex ratiob. ... an exact binomial goodness of fit test.c Difference in prevalence between males and females was tested using a exact -
Biol. Lett. doi:10.1098/rsbl.2011.0160 Published online Evolutionary…
www.jiggins.gen.cam.ac.uk/pdfs/longdon2011b.pdf18 Jul 2011: This model ofsequence evolution was selected by comparing alternative modelsusing Akaike information criterion in MODEL TEST [15]. ... To test whether the sigma viruses have exclusivelycospeciated with their hosts, we compared the hostand virus -
doi:10.1016/j.cub.2006.01.065
www.jiggins.gen.cam.ac.uk/pdfs/Obbard_2006.pdf9 Oct 2007: Therefore, to test for positive se-lection in the siRNA genes, we used McDonald-Kreitman(MK) tests [15]. ... 1987). A test ofneutral molecular evolution based on nucleotide data. Genetics116, 153–159. -
The Evolution of Parasite Recognition Genes in the Innate Immune…
www.jiggins.gen.cam.ac.uk/pdfs/JME-pgrp.pdf3 Nov 2006: We then used Fu and Li’s (1993) Dand F tests, using D. ... Fu Y-X, Li W-H (1993) Statistical tests of neutrality of mutations. -
Adaptive Evolution and Recombination of Rickettsia Antigens Francis…
www.jiggins.gen.cam.ac.uk/pdfs/JME2006.pdf3 Nov 2006: topology relative to the maximum likelihood topology using the. SH test (Goldman et al. ... All P values were Bon-ferroni corrected for multiple tests performed on each alignment. -
mbev_19_814.1341_1349.tp
www.jiggins.gen.cam.ac.uk/pdfs/MBE.pdf3 Nov 2006: M8: 2Dl 5 91.62, df 5 2, P ,0.001). Similarly, these tests supported the presence ofpositive selection in the C. ... Comput. Appl. Biosci. 13:555–556. ———. 1998. Likelihood ratio tests for detecting positive se-lection and application to primate -
Potential role of the sexually transmitted mite Coccipolipus…
www.jiggins.gen.cam.ac.uk/pdfs/rhule%202010.pdf17 Mar 2010: test, p = 0.435). Once established, mite populations developed atsimilar rates on A. ... Egg hatch rates were compared using theWilcoxon Rank Sum Test. 246 E.L. -
mbev_19_923.1640_1643.tp
www.jiggins.gen.cam.ac.uk/pdfs/Wolb%20Recomb%20reprint.pdf3 Nov 2006: TAXA GENE LENGTHNUM-. BER uW. CORRELATION. r2, d zD9z, d. PERMUTATION TESTS FORRECOMBINATION. ... The presence or absence of recom-bination can be tested for using a permutation test. -
PNAS202122026_proof
www.jiggins.gen.cam.ac.uk/pdfs/brosh2022.pdf24 Aug 2022: 3B;Tukey HSD test, chromosome 2 vs. 3: P < 0.00001, chromosomeX vs. ... S2A; Welch’s t test: t =12.51, df = 5.81, P = 0.00002). -
Copyright � 2005 by the Genetics Society of AmericaDOI: ...
www.jiggins.gen.cam.ac.uk/pdfs/Adalia.pdf3 Nov 2006: These tests comparethe number of mutations on internal branches with thoseon terminal branches. ... TABLE 2. The probabilities of the observed values of test statisticsunder the neutral model. -
Molecular Ecology (2007) 16 , 3947– 3954 doi:…
www.jiggins.gen.cam.ac.uk/pdfs/carpenter07.pdf18 Feb 2008: other. The test then estimateswhether these regions are longer than would be expectedby chance. ... Genetics, 155, 2011 – 2014. Hudson RR, Boos DD, Kaplan NL (1992) A statistical test fordetecting geographic subdivision. -
jeb_1305 965..970
www.jiggins.gen.cam.ac.uk/pdfs/jiggins07.pdf18 Feb 2008: same as the ratio of synonymous : nonsynonymous. interspecific differences. The McDonald–Kreitman test. ... Table 3 McDonald–Krietman tests on dif-. ferent domains of the serine proteases. -
hered master 8..hered 357 .. Page87
www.jiggins.gen.cam.ac.uk/pdfs/Heredity1998.pdf3 Nov 2006: The cause of this sex ratio bias isnot known. The hatch rates of broods from all-female matri-lines and normal sex ratio matrilines are significantlydifferent (Mann–Whitney U-test: n ... normal matrilines (data not shown, Mann–WhitneyU-test: n 1 = 15, -
on June 9, 2017http://rspb.royalsocietypublishing.org/Downloaded from …
www.jiggins.gen.cam.ac.uk/pdfs/duxbury2017.pdf9 Jun 2017: This knowledgegap has partly arisen from the lack of an appropriate empiricalsystem in which to test these predictions. ... 1995 New perspectives oncomparative tests of antagonistic pleiotropy usingDrosophila. Evolution 49, 394 – 397. -
c:/ncl/par586
www.jiggins.gen.cam.ac.uk/pdfs/P.pdf3 Nov 2006: bacteria known to cause male-killing in other insects. Spiroplasma-specific PCR reactions were used to test. ... 51,. U 485 ; P! 00001) (First instar survival : datanot shown ; Mann–Whitney U-test : n. " -
Endocrinology 2008 149:955-961 originally published online Nov 26,…
www.jiggins.gen.cam.ac.uk/pdfs/Wadeetal2008.pdf12 Apr 2011: B, Insulin tolerance test with12 U/kg in 10-wk-old OB (squares, solid line) and OB2C (filled dia-monds, dashed line) mice. ... However, interpretation ofthese insulin tolerance test results is confounded by the sig-nificantly elevated (relative to OB) -
Butterfly genome reveals promiscuous exchange of mimicry adaptations…
www.jiggins.gen.cam.ac.uk/pdfs/Heliconius2012.pdf16 Nov 2012: 3b). To test whether mimicry loci might be intro-gressed between co-mimetic H. ... melpomene23,24 (Fig. 4a). For a reciprocal test, we used the same H. -
genet85449 2191..2199
www.jiggins.gen.cam.ac.uk/pdfs/Bangham2008b.pdf8 May 2009: oftransmission was 8% (Wilcoxon’s signed-rank test U 1020, nsusceptible 60, nresistant 17, P , 0.0001). ... Wilcoxon’s signed-rank test U 840, nsusceptible 60,nresistant 14, P , 0.0001). -
genet45435 1847..1859
www.jiggins.gen.cam.ac.uk/pdfs/Drosomycin.pdf3 Nov 2006: 2002)].We wanted to test whether this pattern of evolution. was general across Drosophila AMPs. ... This permutation test accountsfor multiple tests. We detected only one possible gene con-version event in D. -
1471-2148-8-274.fm
www.jiggins.gen.cam.ac.uk/pdfs/obbard2008.pdf8 May 2009: point, andsignificance of the observed chi-square statistic is assessedby a permutation test. ... Tests of neutrality within allelic classesFirstly, to test for a non-neutral rate of protein evolutionwe used a test directly analogous to that of McDonald -
Genetic variation affecting host–parasite interactions: major-effect…
www.jiggins.gen.cam.ac.uk/pdfs/Bangham2008.pdf8 May 2009: We wanted to test whether the three crosses had yieldedsignificantly different QTL locations. ... Table 2 Test of whether the QTLs are in different locations in the three crosses. -
genet127696 141..150
www.jiggins.gen.cam.ac.uk/pdfs/Longdon2011.pdf11 May 2011: In all crosses, uninfected partners were assayed forinfection to test whether horizontal transmission had occurred. ... We tested for recombination with a four-gamete test(Hudson and Kaplan 1985). -
Male-killing Wolbachia in two species of insect Gregory D. ...
www.jiggins.gen.cam.ac.uk/pdfs/ProcRSocMKW.pdf3 Nov 2006: b) Test for known male-killers in Adalia bipunctataGenomic DNA was prepared from ovaries of one individual. ... This di¡erence isnot signi¢cant at the 5% level according to the KishinoHase-gawa test. -
Molecular Ecology (2007) 16 , 3497–3510 doi:…
www.jiggins.gen.cam.ac.uk/pdfs/Obbard_2007.pdf18 Feb 2008: Third, weused population-genetic tests based on the observed levelsgenetic differentiation between population and patterns ofdiversity to test whether these genes show evidence ofstrong or recent adaptive evolution. ... Second,we applied tests separately -
PAR1100048 858..865
www.jiggins.gen.cam.ac.uk/pdfs/wilfert2011.pdf18 Jul 2011: Theprevalence of infection varied significantly amongthese species (Fisher Exact Test: P=002), but wasalways below 5%. ... C. and Felsenstein, J. (1965). The robustness of homogen-eity tests in 2 X n tables. -
Genetic variation in Drosophila melanogaster pathogen susceptibility
www.jiggins.gen.cam.ac.uk/pdfs/Tinsley.pdf3 Nov 2006: Post-hoc tests. were used to investigate pairwise differences between. population means, corrected for multiple com-. ... African populations displayed higher resistance. Study of further populations will be required to test. -
Providencia sneebia sp. nov. and Providenciaburhodogranariea sp.…
www.jiggins.gen.cam.ac.uk/pdfs/Juneja&Lazzaro2009.pdf12 Apr 2011: rustigianiiDSM 4541T. Test strips were run once for P. rustigianiiDSM 4541T and non-type strains of the novel species. ... DResults were determined using the API 20 E (a) or API 50 CH (b) test strip. -
doi:10.1098/rspb.2007.0611
www.jiggins.gen.cam.ac.uk/pdfs/banghamprocB2007.pdf9 Oct 2007: 1996), but which only used three. resistant haplotypes, which was too few to test for. ... Lewontin, R. C. & Felsenstein, J. 1965 The robustness ofhomogeneity tests in 2!n tables. -
on March 3, 2017http://rspb.royalsocietypublishing.org/Downloaded…
www.jiggins.gen.cam.ac.uk/pdfs/longdon2017.pdf3 Mar 2017: There were significant differences in theprevalence between populations (electronic supplementarymaterial, tables S4 – S6) for CCapSV (figure 2; x2-test,d.f. ... levels of genetic differen-tiation with a KST value of 0.15 ( permutation test, p , 0.001). -
Two male-killing Wolbachia strains coexistwithin a population of the…
www.jiggins.gen.cam.ac.uk/pdfs/two%20male-killers.pdf3 Nov 2006: Further data are clearly necessary. We aim to test these ideas in a second insect order byinvestigating in more detail the butteries A. ... However, gene sequence datawere not obtained from all these lines to test whetherthese bacteria were monophyletic -
royalsocietypublishing.org/journal/rspb ResearchCite this article:…
www.jiggins.gen.cam.ac.uk/pdfs/martinez2019.pdf5 May 2020: possibleproducts of recombination deviated from the expected 50 : 50ratio (binomial test, p < 0.01). ... We conducted a Mantel test with 1000 permu-tations by randomly attributing Wolbachia treatments topopulations. -
Contrasting Evolutionary Patterns in Drosophila Immune Receptors…
www.jiggins.gen.cam.ac.uk/pdfs/JigginsKim2006.pdf9 Oct 2007: The McDonald-Kreitman test was not significant for TepII or TepIV. Tep Polymorphism. ... Intron coding 76 35 20 15 n.s. a Two-tailed Fisher exact test. -
TPM10718 715..721
www.jiggins.gen.cam.ac.uk/pdfs/ariani2015a.pdf11 Nov 2015: Wecounted the number of eggs laid in each cup and collectedthe adult females.To test if body size correlated with the autogeny trait in. ... To test if temperature affects. the autogeny trait we had two treatments, low temperature(22C) and standard -
Recombination confounds interpretations of Wolbachia evolution
www.jiggins.gen.cam.ac.uk/pdfs/recombination%20proc%20r%20soc.pdf3 Nov 2006: We then tested directly whether the phylogenetic signals ofthe two genes are mutually incompatible using the parsimony-based partition homogeneity test (Farris et al. ... other respects).The test statistic was then recalculated for each replicated pairof -
1471-2156-10-75.fm
www.jiggins.gen.cam.ac.uk/pdfs/Carpenter2009b.pdf22 Feb 2010: region of the gene encoding the PP3 protein (Figure 1;permutation test of clustering: P < 0.0001). ... To test this,we examined whether the rate at which fly mRNAs areedited by ADAR is altered by sigma virus infection. -
doi: 10.1098/rspb.2009.0875, 3619-3627 first published online 16 July …
www.jiggins.gen.cam.ac.uk/pdfs/Weinert%202009%20plasmid.pdf18 Sep 2009: was larger than that of the real data. (ii) Conjugation gene incongruence test. ... model (different substitution patterns and rates, but a. common topology). (iii) Mantel tests. -
pgen.1002337 1..11
www.jiggins.gen.cam.ac.uk/pdfs/magwire2011.pdf4 Nov 2011: Test: W = 110, P = 1.261024).This process was repeated to generate recombinants in the. ... was 9.6-fold greater (Wilcoxon Rank Sum Test: W = 88,. P = 2.661025). -
A Polymorphism in the Processing Body Component Ge-1 Controls…
www.jiggins.gen.cam.ac.uk/pdfs/cao2015.pdf24 Jan 2016: to just under 8kb (2L: 11094733–11102848, BDGP5; Fig 2A, Wilcoxon Rank Sum Test: W = 32, P = 0.0063). ... 0.009; Ge-1 heterozygous background: Wilcoxon RankSum Test: W = 87, P = 0.02). -
Vector competence of Aedes aegypti mosquitoes for filarial nematodes…
www.jiggins.gen.cam.ac.uk/pdfs/ariani2015b.pdf11 Nov 2015: 2.3. Experimental design. To test if age affected the susceptibility of mosquitoes to B. ... Fisher's exact test, p = 0.007) andin six-week old LVP-R (Fisher's exact test, p = 0.04). -
evol_56_1114.2290_2295.tp
www.jiggins.gen.cam.ac.uk/pdfs/Evolution%20high%20prevalence.pdf3 Nov 2006: The appropriate test given our experimen-tal design is the G test (Sokal and Rohlf 1995). ... However,this test becomes inaccurate at small sample sizes (Sokal and. 2292 FRANCIS M. -
msaa209
www.jiggins.gen.cam.ac.uk/pdfs/martinez2020.pdf22 Apr 2021: 2018), syntenic cifA and cifB genes showstrong phylogenetic congruence (Mantel test P-value <0.0001; supplementary fig. ... 4!10$4 mutations/amino acid; cifB: 3!10$4 mutations/amino acid; Fisher’s exact test: P0.64).
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